Tamo006745.1
Basic Information
- Insect
- Tenthredo amoena
- Gene Symbol
- -
- Assembly
- GCA_963966615.1
- Location
- OZ016484.1:6746620-6751541[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.46 49 5.2 0.0 1 23 152 174 152 174 0.94 2 21 2.2e-06 0.00024 21.9 2.0 1 23 180 202 180 202 0.97 3 21 0.007 0.75 10.9 3.8 2 23 209 230 209 231 0.94 4 21 5e-05 0.0053 17.7 1.1 1 23 236 258 236 258 0.98 5 21 0.00037 0.039 15.0 0.8 1 23 264 286 264 286 0.97 6 21 0.00014 0.015 16.3 5.4 1 23 297 319 297 319 0.97 7 21 1.7e-06 0.00018 22.3 1.1 1 23 328 350 328 350 0.98 8 21 2.5e-05 0.0026 18.7 1.7 1 23 356 378 356 378 0.98 9 21 4.7e-06 0.0005 20.9 3.9 1 23 384 406 384 406 0.97 10 21 5.6e-07 5.9e-05 23.8 2.5 1 23 412 434 412 434 0.98 11 21 5.4e-05 0.0057 17.6 0.3 2 23 510 531 509 531 0.96 12 21 0.00014 0.015 16.3 2.7 1 23 543 566 543 566 0.96 13 21 0.084 9 7.5 5.5 2 23 574 596 571 596 0.84 14 21 0.25 27 6.0 0.0 2 23 604 625 603 625 0.96 15 21 0.00019 0.02 15.9 3.9 1 23 631 653 631 653 0.98 16 21 0.0045 0.48 11.5 0.3 2 23 660 681 659 681 0.96 17 21 0.61 65 4.8 0.2 1 23 687 709 687 709 0.94 18 21 0.18 19 6.5 0.3 1 23 718 740 718 740 0.97 19 21 0.00012 0.012 16.5 0.4 3 23 747 767 745 767 0.97 20 21 8.2e-05 0.0087 17.0 3.0 1 23 773 795 773 795 0.97 21 21 0.00063 0.067 14.2 6.1 3 21 803 821 801 822 0.91
Sequence Information
- Coding Sequence
- ATGACCTGGCCCATCTTTATCCATACCCACATCCATATCAATAAAGATAGATTCCTTTCCTTCAACTGGGTTTCCCTCGGCTCTACCGAGTGCAGGGTCCGTCATCTGAGCTTTGGCATCGGAGAGTCGAAATGTGAGAAGGCAGACGGTGGGCGCTTGCTTCGGCAAGTTCAAATCAACGTACAGAATAAATTCATCGCAGGTCGGAGCaggaggagaaaaatgaaggtGGATTCGAAGCCGCTACCATCTAAAGTCTGGAGGTTTGAAGTCAGAAGCAGTAGAAAAGCCATAGCATATTTTATAACAAAGAGCAGCGACGTCAGGTTGGCTGTTAGCACGGTCGAGATGTCTCAGGACTGTAGGGGTACAGAGATAGAAATGGAGGATCAAAAGATATCTATGAACGAACAGAGTTTGCAAGTCGATGACAACAACGACGCCGCTAGACTATACCTCTGCAATTTGTGCGGCGACGGTTTCGCCTCCGAACAGGCGCTAGCGGGTCATGTCGAGGTCCACGACGATAAGTATCCTTACGCGTGCGACCACTGCGGACGAAGTTTTAAGACCACCTCGGTGCTGAGGAAACATCAGCTGATTCACACTGGGGAGAAAACAAACGTATGCGAAACTTGCGGATACTCTAGTCTCCACCGTTCTAATCTTGTTAATCACCAACGGCGTCATCACTTTGACTACAAGTACCGTTGCGACGTTTGCAGCATGGGATTTTACACCAAGAGTAATTACCAGGAACACCAGACTATTCACAGTAGGGAGAAACCGTTTCAATGTCAGATATGCCAGGCCTCGTTTAGGTACCGTCAGGGCTTAAGGCTCCACGCCAAGTTGCATCAGCCGGACTATGTTCCGCCCCAAAAAAAGCACCACTGCGAATTGTGCAACAAAAGATTTTCGCGAAAACAGGTATTGCTGGTTCACATGAAGACCCACAGCACTGGCGTTGTTCAGAGTGAATTCGTCTGCCACATATGTGGCAAGGCTGTATCGAGCAAGACTTACCTCACTGTTCACGTGAGGAAACACACGGGCGAGAAACCCCACGTTTGCGATTTGTGCAACAAAGGTTTTATATCACAGAATTATCTCAGCGTACATAGGCGGACTCACACCGGCGAAAGACCGCACGAGTGTACCCATTGCGGTAAAAGATTCACGCAAAGAACCACGCTGGTCGTTCATCTCAGGGGTCATACAGGGGATCGTCCCTATCCTTGTAACATTTGCCACAAGTCTTTCGCCTCTAAAACAATGCTCAATTCACACCTTAAAACTCACGCTAAACAGAACGCTCGCGCCCAGCAAGAACAGCAGAGAAACGACGGATATGGCACTGAGGAGGCATCCCTTCAGATCGTCGTGAAAGAAAGCCAAaccctttctttctttcctatGAGCGACAGGACCAATTTTGGAGAGAGTAGAATAGGATCAAGCCCGGAGCCACCTACCCCGTGTCATTCTTATCTCCCTTACGTTTTCAGTTTGGAATTGTTGGATACGCGTTGCAATATTTGCGGAAAGATTTTTATAGACCAGCTCTATCTAGCGAAGCATAAAATTTCACACGACAATAATTCCGAGAGAAACTCTGTCCTCCTATATCAATGCAAAGACTGCGATAGAGTTTTCAAAACTAGAGAAGACTGCCGTTCCCACCTTCTTAGCATACATTGCGATAAAGAACACACTTGTACCTGCAGCTATTGCGGCAAGGTGTTTAAGACAACTGCCGCCCATGACATACATGTTAGGAAGAAGCATGACGATAATAGAGAGAATCTTAGCTGCGTAGAATGTAACTTCGAGGCTTCGGACGCTGTTGATTATCTGGCACATCGTAAAATGCATAATGACAATAGAATTTTCCGCTGCGAGTACTGTGACTTCAAAACTAAAAACAGTAAGAGCCTTCAAACGCACAGAAGGCTGCATACAAACGATTACAGTCTGCGCTGTGACGTTTGTTCAAAGGGCTTTGTCTCCCAGCCGGTATTGGATAGACATAAGACAACTCACACTGGTGAGAGACCGTTTGCTTGCCAAGTTTGCTCCGCTTTGTACGCAGATAAACGCAGCTTGCTGCTTCATTCTACATCACACGATCCCAAGGGGCGCGAGAAGAAATATCAGTGTCAGATTTGCGCTTATTCTAGCTTCTGGAAAGGAGCTGTTAGAGTTCATATGAAAACACATACCGGGGCTAAAGTGATTTGCCATATTTGCGGGCAACCCGTTAGCAGCAATCATTATCTCGGTATTCACATGCGAATTCACACTGGGGAAAAACCCTACAATTGTCAAATATGCAACAAAGGATTCAGGCaactgaaaaatttaatcgtaCATTGCCGTACTCATACTGGTGAAAAACCTCACCTATGTGACAAATGTTCCAAGTCATTTTCCCAAAAGTCTTCTCTCAAAAACCACAAGTGTAAACCTATAGCTTGA
- Protein Sequence
- MTWPIFIHTHIHINKDRFLSFNWVSLGSTECRVRHLSFGIGESKCEKADGGRLLRQVQINVQNKFIAGRSRRRKMKVDSKPLPSKVWRFEVRSSRKAIAYFITKSSDVRLAVSTVEMSQDCRGTEIEMEDQKISMNEQSLQVDDNNDAARLYLCNLCGDGFASEQALAGHVEVHDDKYPYACDHCGRSFKTTSVLRKHQLIHTGEKTNVCETCGYSSLHRSNLVNHQRRHHFDYKYRCDVCSMGFYTKSNYQEHQTIHSREKPFQCQICQASFRYRQGLRLHAKLHQPDYVPPQKKHHCELCNKRFSRKQVLLVHMKTHSTGVVQSEFVCHICGKAVSSKTYLTVHVRKHTGEKPHVCDLCNKGFISQNYLSVHRRTHTGERPHECTHCGKRFTQRTTLVVHLRGHTGDRPYPCNICHKSFASKTMLNSHLKTHAKQNARAQQEQQRNDGYGTEEASLQIVVKESQTLSFFPMSDRTNFGESRIGSSPEPPTPCHSYLPYVFSLELLDTRCNICGKIFIDQLYLAKHKISHDNNSERNSVLLYQCKDCDRVFKTREDCRSHLLSIHCDKEHTCTCSYCGKVFKTTAAHDIHVRKKHDDNRENLSCVECNFEASDAVDYLAHRKMHNDNRIFRCEYCDFKTKNSKSLQTHRRLHTNDYSLRCDVCSKGFVSQPVLDRHKTTHTGERPFACQVCSALYADKRSLLLHSTSHDPKGREKKYQCQICAYSSFWKGAVRVHMKTHTGAKVICHICGQPVSSNHYLGIHMRIHTGEKPYNCQICNKGFRQLKNLIVHCRTHTGEKPHLCDKCSKSFSQKSSLKNHKCKPIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00938929;
- 90% Identity
- -
- 80% Identity
- -