Malb002421.1
Basic Information
- Insect
- Macrophya alboannulata
- Gene Symbol
- -
- Assembly
- GCA_949628255.1
- Location
- OX451206.1:22680877-22687045[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.082 10 7.6 0.0 1 23 36 58 36 58 0.95 2 20 4.7e-06 0.00059 21.0 3.0 1 23 64 86 64 86 0.98 3 20 0.0063 0.8 11.2 3.8 2 23 93 114 93 115 0.94 4 20 4.5e-05 0.0056 17.9 1.1 1 23 120 142 120 142 0.98 5 20 0.00033 0.041 15.2 0.8 1 23 148 170 148 170 0.97 6 20 1.1e-05 0.0014 19.8 3.1 1 23 181 203 181 203 0.97 7 20 1.5e-06 0.00019 22.6 1.1 1 23 212 234 212 234 0.98 8 20 2.2e-05 0.0028 18.9 1.7 1 23 240 262 240 262 0.98 9 20 4.5e-06 0.00057 21.1 3.7 1 23 268 290 268 290 0.97 10 20 2.3e-06 0.0003 22.0 0.8 1 23 296 318 296 318 0.98 11 20 0.0002 0.025 15.9 0.1 2 23 393 414 392 414 0.96 12 20 0.0032 0.4 12.1 6.8 1 23 426 449 426 449 0.96 13 20 0.015 1.9 10.0 0.4 1 23 456 479 456 479 0.93 14 20 0.00017 0.021 16.1 3.9 1 23 514 536 514 536 0.98 15 20 0.0017 0.21 13.0 0.4 2 23 543 564 542 564 0.97 16 20 0.16 21 6.7 0.4 1 23 570 592 570 592 0.95 17 20 0.086 11 7.6 0.5 2 23 602 623 601 623 0.97 18 20 0.0001 0.013 16.8 0.4 3 23 630 650 628 650 0.97 19 20 0.00013 0.017 16.4 3.0 1 23 656 678 656 678 0.97 20 20 0.0005 0.063 14.6 5.9 3 21 686 704 684 705 0.91
Sequence Information
- Coding Sequence
- ATGTCTCAGGACTGTAGGGGTACAGAGATAGAAATCGAGGATCAAAATTTAACACTGAACGAACAGAGTTTGCACGTCGATGACAACAATGATGCCGCTAGGCTATACCTCTGCAATTTGTGTGGTGATGGTTTCGCCTCCGAACAGGCGCTAGCAAGTCACGTTGAGGTGCATGATGATAAGTATCAATACACGTGCGACCACTGTGGAAGAAATTTTAAGACCACTTCAGTGCTGAGGAAACATCAGTTGATCCATACAGGGGAGAAAACAAACGTTTGCGAAACATGCGGATACTCTAGTCTCCACCGGTCTAATCTTGTTAATCACCAAAGGCGTCATCACTTTGACTACAAGTATCGATGTGACGTTTGCAGTATGGGATTTTACACAAAGAGTAATTATCAGGAACACCAGACTATTCACAGTAGGGAGAAACCGTTTCAATGTCAGATATGCCAGGCCTCGTTTAGGTACCGTCAGGGCTTAAGGCTTCATGCCAAGCTCCATCAGCCTGATTATGTTCCGCCGCAAAAAAAGCACAATTGCGAATTGTGCAATAAAAGATTCTCGCGAAAACAGGTATTACTAGTTCACATGAGGACTCATAGCACCGGCGTTGTTCAGAGCGAATTTGTCTGTCATATTTGCGGCAAGGCTGTATCCAGCAAGACGTACCTTACCGTTCATGTGAGAAAACACACGGGCGAAAAACCGCATGTATGCGATTTGTGCAACAAGGGTTTTATATCACAGAATTATCTCAGTGTACATAGGCGGACTCATACCGGCGAGAGACCCCACGAATGTAGTCATTGCGGTAAAAGATTCACCCAGAGAACAACCCTGGTTGTTCATCTCAGAGGTCATACCGGAGATCGTCCCTATCCATGCAACATTTGTCTCAAGTCTTTTGCATCTAAAACAATGCTCAATTCACACCTTAAAACTCATGCTAAACAGAACGCTCGCGCCCAGCAAGAACAGCAAAGAATCGATGGATACGGCACTGAGGAGGCATCCCTTCAGTTCGTCGTCAAAGAAAGTCAATCTTCTTCCTTCCCTAGCAGCGTCAGGACTGATCTTCGAGAGAGTAGGATAGGATCAAGATCGGAAACATTCGCCCCGTGTCTCTCTGACCTCCCTAACGTTTTTAGCTCACAAATAACTAATACGCGATGCGATATTTGCGGAAAGATTTTTATAGACGAACTTTACCTAGCAAGGCATAAAATTTCACACGATTATAATTTCCAAATAAGATTTGTTTACTTCTACCAATGCAAAGAGTGCGATAGAGTTTTCAAAACTAGAGAACACTGCCATGCCCATCTTCTTAGTACCCATTGTAGTGAAAAACCCACTTTTACCTGTATCTATTGCGGAAAGGTGTTTAGGACAGTGGCCGCCCGCGACGTACATGTTAGGAAAAAGCACGATAATAATAGGGAAAATCTGTGCTGTAGGGAATGTAATTTCGTGACTTTAGACTCTGTTGGTTATCGGGCACATTGTAAAATGCATAATGAGAATCGAATCTTTCGTTGCGAGTACTGTGACTTTAAAACTAAGAACAGTAAGAGCCTTCAAACGCACAGAAGGCTGCATACAAATGAGTACAGTTTACGCTGCGACGTTTGTTCCAAGGGTTTTATTTCAAAGACTGTATTGGATAGGCATAAGATAACTCACACTGGTGAGAGACCGTTTTCTTGCCAAGTTTGCTCGGCTTTGTATGCCGACAGGCGCAGCTTGCAGCTTCATTCTACTTCCCACAATCCTAAGggacgtgagaaaaaaaatcagtgcGAAATTTGCGGATATTGTAGCTTTTGGAAGGGAGCTGTTAGAGTTCATATGAAAGTTCACACCGGGGCTAAAGTTATTTGTCACATTTGCGGACAACCTGTTAGTAGCAATCATTACCTTGGTATTCATATGAGGATTCATACCGGTGAAAAACCCTACAATTGTCAAGTTTGCAACAAGGGATTCagacaattgaaaaatttaattgtacatTGCCGAACTCATACCGGGGAAAAACCTCACCTATGTGATAAATGTTCTAAGtcattttcacaaaaatcttCTCTCAAAAATCACAAGTGTAGAGCTATCGtttga
- Protein Sequence
- MSQDCRGTEIEIEDQNLTLNEQSLHVDDNNDAARLYLCNLCGDGFASEQALASHVEVHDDKYQYTCDHCGRNFKTTSVLRKHQLIHTGEKTNVCETCGYSSLHRSNLVNHQRRHHFDYKYRCDVCSMGFYTKSNYQEHQTIHSREKPFQCQICQASFRYRQGLRLHAKLHQPDYVPPQKKHNCELCNKRFSRKQVLLVHMRTHSTGVVQSEFVCHICGKAVSSKTYLTVHVRKHTGEKPHVCDLCNKGFISQNYLSVHRRTHTGERPHECSHCGKRFTQRTTLVVHLRGHTGDRPYPCNICLKSFASKTMLNSHLKTHAKQNARAQQEQQRIDGYGTEEASLQFVVKESQSSSFPSSVRTDLRESRIGSRSETFAPCLSDLPNVFSSQITNTRCDICGKIFIDELYLARHKISHDYNFQIRFVYFYQCKECDRVFKTREHCHAHLLSTHCSEKPTFTCIYCGKVFRTVAARDVHVRKKHDNNRENLCCRECNFVTLDSVGYRAHCKMHNENRIFRCEYCDFKTKNSKSLQTHRRLHTNEYSLRCDVCSKGFISKTVLDRHKITHTGERPFSCQVCSALYADRRSLQLHSTSHNPKGREKKNQCEICGYCSFWKGAVRVHMKVHTGAKVICHICGQPVSSNHYLGIHMRIHTGEKPYNCQVCNKGFRQLKNLIVHCRTHTGEKPHLCDKCSKSFSQKSSLKNHKCRAIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00939790; iTF_01411734;
- 90% Identity
- iTF_00939790;
- 80% Identity
- -