Tamo006483.1
Basic Information
- Insect
- Tenthredo amoena
- Gene Symbol
- bab2
- Assembly
- GCA_963966615.1
- Location
- OZ016484.1:4714625-4726067[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.7e-12 4.3e-09 36.5 0.0 1 39 378 417 378 421 0.90 2 4 8.9e-12 5.7e-09 36.1 0.1 2 39 433 470 432 473 0.94 3 4 3.2e-18 2.1e-15 56.7 0.0 2 45 488 532 487 532 0.97 4 4 1.9e-18 1.2e-15 57.4 0.1 1 42 539 581 539 582 0.97
Sequence Information
- Coding Sequence
- ATGAATCGGGATTGGGGAACACACTACAGtGGAGGGATGGCGGGGCAGCACTACTGCCTGCGCTGGAACAATTACCAGTCGAACATGACTTCCGTGTTCCATCAGCTGCTTCAAACCGAAGCATTTGTCGACGTAACTTTAGCCTGCAACGAGGCCTCCCTCAAAGCTCACAAGGTGGTTTTATCCGCGTGCAGTTCGTACTTTCAAAAGTTATTGCTCTCGAATCCTTGCAAACATCCAACCATCATTATGCCTCAGGACGTTTGTTTCACGGACCTTAAGTTCATCATAGAATTCGTCTACAGAGGTGAAATAGACGTGTCACAAGCTGAACTACagTCCCTATTGAAAACTGCTGATCAATTGAAGATCAAGGGCCTCTGCGAAGTCCCAGAAAGTAAAGAGGGTCCGCCGTCAGTTAGCTTAAGTTCACCGCCTAGAGATCGTGATTCTGCAGCAACACCACGTTTGAATTATACTAAATTGAGAAGACAACATCATCCGAGATACAAAAGGCCCAGATTTGAGGCCAGGTCCGATTCGAGGATATTTGACAAATATAAAGAGGAGGAGACCGAGGGATTTTGTCGAAACGATAAAGAGAATCACAGGGACTGGCAGACTGAAGATGAGGAGTTCGGCGAACCTACAGTAGTTTTAGAATCGAGACAGAAGGACTTAAACAACGGTAAcacaaacaacaacaacgGTGAGATGTTTTGTCACACAGGAATGGGACATTACGGTCATCATACGGATCCAGGAGACGTTGATTTACCACCCGAAACTCAACCCACACCTCCAAGCGCTACTCTTGTCGGTACAACAATAACGCATTTGAGAGACCCCGACCACCAGTCGACAGAAATACAAAATTGTGACAgtgttaaaataaaatttgagacACTGCACACGATGGACTCGACGGACACAATAGATATAGATAGTCATATGTCAGATCGAGCTAGCGTCAGTTCAAAAACAACAGGAGATAATGACAACATGATGATGATCACTCCAGAACTACTCGGCCTCATGCCGTCCGGCAGTTCCGGACATTCTGATGCTGGAGACAACGGGAGATCACATTCCGGACAAATCGGTCCTCATCATCATGGATCTAAATCTTGGACCCAGGACGACATGGATGCCGCTCTTGATGCCTTAAGAAATCACGATATGAGTCTCACGAAGGCTTCAGCGACGTTTGGAATCCCTTCGACGACTCTGTGGCAGCGAGCTCATCGGCTAGGTATTGATACCCCAAAAAAGGACGGACCAACCAAGTCCTGGAGTGACGAGAGCCTGAATAACGCGTTAGAAGCTCTCAGAACTGGTACAATTTCTGCAAATAAAGCATCCAAAGCCTTTGGCATACCTTCTAGCACATTATATAAAATTGCAAGAAGAGAAGGGATCAGATTAGCTGCGCCTTTCAATGCTAGTCCAACTACTTGGTCACCCGCCGATCTTGACAGAGCCTTAGAAGCCATTAGATCAGGACAAACTTCAGTACAAAGGGCTTCTACGGAATTCGGTATACCGACCGGCACACTTTACGGGAGATGTAAAAGAGAGGGAATCGAATTGAGCAGGAGTAATCCTACTCCGTGGAGTGAAGACGCTATGACCGAAGCTTTAGAAGCAGTTAGAATGGGTCATATGAGCATCAATCAAGCTGCGATACATTATAATTTACCATATTCCTCGTTATATGGTAGATTTAAAAGAGGCAAATACGAAGAACCTGTAGGAAATGAAATGTCTCAGGACAGTAACAGCCTTCATTATCACAGCCCGAACCAAAACCACTCTTCTTCTGTTCCCGATCAAATGCCCTATCAGGGTAGCTGA
- Protein Sequence
- MNRDWGTHYSGGMAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFTDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESKEGPPSVSLSSPPRDRDSAATPRLNYTKLRRQHHPRYKRPRFEARSDSRIFDKYKEEETEGFCRNDKENHRDWQTEDEEFGEPTVVLESRQKDLNNGNTNNNNGEMFCHTGMGHYGHHTDPGDVDLPPETQPTPPSATLVGTTITHLRDPDHQSTEIQNCDSVKIKFETLHTMDSTDTIDIDSHMSDRASVSSKTTGDNDNMMMITPELLGLMPSGSSGHSDAGDNGRSHSGQIGPHHHGSKSWTQDDMDAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRMGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVGNEMSQDSNSLHYHSPNQNHSSSVPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_01413017;
- 80% Identity
- iTF_01411652;