Tsin082055.1
Basic Information
- Insect
- Tenodera sinensis
- Gene Symbol
- CREA
- Assembly
- GCA_030765045.1
- Location
- CM060974.1:1885253-1888545[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.002 45 6.5 0.4 20 45 68 93 51 100 0.75 2 11 0.016 3.6e+02 3.7 0.3 21 48 97 124 93 131 0.85 3 11 0.081 1.9e+03 1.4 0.3 20 45 125 150 117 155 0.80 4 11 0.0024 55 6.3 0.2 22 50 156 184 147 187 0.82 5 11 0.033 7.5e+02 2.6 0.2 21 45 184 208 178 213 0.87 6 11 0.00015 3.5 10.1 0.6 21 48 213 240 207 244 0.90 7 11 0.064 1.5e+03 1.7 0.0 22 45 243 266 240 271 0.88 8 11 0.00067 15 8.0 0.1 19 43 297 321 287 326 0.85 9 11 0.036 8.3e+02 2.5 0.0 22 46 328 352 324 359 0.84 10 11 0.0099 2.3e+02 4.3 0.7 19 48 354 383 347 388 0.81 11 11 0.0039 90 5.6 0.1 22 48 386 412 380 415 0.88
Sequence Information
- Coding Sequence
- ATGGAGAAGACAGCGGAGCTGAAACTAGATAGTCAACCACAACAGGTGACTCCAGAAGTACCTCAAGGAATCAAATTTCCACCACGTTGGGGTGATTTCTGGCAAGAGTTCCTGGTACCCCATAACAGTTCATCAGCAAGCAACAATGGTTCTGCAACTCCATTGTCTACAAGTGAGCCAAACTCCCAGACACCCAAGCCCAACTTGGATAGACCTTATAGGTGTGATGTGTGTGGAAAAGCATTCACACAGGCTCGCCATCTCACACGCCACAGTATGGTGCACACAGGGGAGAAGCCCTACTCCTGTAAGCAGTGTTTAAAGAGATTCTCACAACAAAGTGACCTCACTCGCCATATCCGTCGCATCCACACAACAGAGAAACCCTACGTCTGTGGTGTTTGTGTGAAGGGCTTCTCCCAACGAGGTGACTTCATCAGACACACCCAGCGAGTTCATGCAGAAAACAAGCCACATGTTTGTTCCATTTGCATGAAGAACTTTGCTCAGTATGGCGACCTTAAGAGACATAAGGTCCGTGTTCACACTGCCGAGAAGCCATTTTTGTGCCAAGTATGTTTACACAGGTTTAGCCAACACGGGGATCTTGTCCGACATACTCGCCGTGTACACACTGGGGAACGTCCGTTTTCCTGCACTATATGCGTCAAAAGTTTTGTGCAAAGAGCTGATCTTAACCGCCACATTCGTCTTGTTCATACTGGGGAGCGTCCCTTCGTGTGTGACCTGTGCCTGAAGGGGTTTGTCCAACTAGGCGATCTGACCAGACACGTAAGACGAGTCCATGGTGGAGAGGGCAGGCAGTATCATAGCTCACCCTGCATACTGAGCCCAACTGCATCTGACCTCAGCAAACGCCCTCAAAGTGTTGATGCTGAACGACCCTACGTCTGTGACGTCTGTGGTAAAGCATTCTTGCAAGCTCGCCACCTGTCCCGTCATAACTTTACGCACACTGATCAGCGTCCTTTCTCCTGTGATGTGTGCCTCAAGGGATTCGTTCAGGCTGGCGACTTGACAAGACACACACGTAGGGTTCATACAAAGGAGAAACCTTTCTTGTGTCAGGTGTGTTTAAAGAGTTTTGTTCAAAGAACTGAACTAACAAGACATACAGTACGTGAGCATACCAAAAAGAAACCATTTCCTTGTAAAATCTGTCTAAAAACTTTCATCCAGGCCACAGATCTCGCACGCCACGTGAAGCGCATGCACACTGGTGGAGAGAAAACATTTTGTGACGTTTGCACACACAACTATACAAATGTTGGAGATGCTACTTCTGTGGAGAGCAGCAAACCTCATCGATCGCAGGCAACAAATGATGCAGACAAGGACAGTGCCACGAGTGACGCACATGCTATGGCCCAGGCGTATGTCACTATGGCTCAGGGTATTACAGTGGCAGTTGGTACTACACCTTGTGTATGTGTACAGGAAAGAAACATTAATGGGGATAAAACAGGTTGTGAACTTCCAGATGTCAACAAAGCACTTTGTGCTTCTAACATACATTAA
- Protein Sequence
- MEKTAELKLDSQPQQVTPEVPQGIKFPPRWGDFWQEFLVPHNSSSASNNGSATPLSTSEPNSQTPKPNLDRPYRCDVCGKAFTQARHLTRHSMVHTGEKPYSCKQCLKRFSQQSDLTRHIRRIHTTEKPYVCGVCVKGFSQRGDFIRHTQRVHAENKPHVCSICMKNFAQYGDLKRHKVRVHTAEKPFLCQVCLHRFSQHGDLVRHTRRVHTGERPFSCTICVKSFVQRADLNRHIRLVHTGERPFVCDLCLKGFVQLGDLTRHVRRVHGGEGRQYHSSPCILSPTASDLSKRPQSVDAERPYVCDVCGKAFLQARHLSRHNFTHTDQRPFSCDVCLKGFVQAGDLTRHTRRVHTKEKPFLCQVCLKSFVQRTELTRHTVREHTKKKPFPCKICLKTFIQATDLARHVKRMHTGGEKTFCDVCTHNYTNVGDATSVESSKPHRSQATNDADKDSATSDAHAMAQAYVTMAQGITVAVGTTPCVCVQERNINGDKTGCELPDVNKALCASNIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00435006;
- 90% Identity
- iTF_01410932;
- 80% Identity
- iTF_01410932;