Tsin059428.1
Basic Information
- Insect
- Tenodera sinensis
- Gene Symbol
- -
- Assembly
- GCA_030765045.1
- Location
- CM060968.1:17721083-17724769[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00032 0.13 15.0 3.5 1 23 141 163 141 163 0.97 2 23 0.0083 3.3 10.6 5.2 1 23 168 190 168 190 0.97 3 23 0.075 30 7.6 0.1 1 21 201 221 201 222 0.92 4 23 0.00049 0.19 14.5 3.4 1 23 266 288 266 288 0.98 5 23 0.00052 0.21 14.4 0.3 1 23 291 313 291 313 0.98 6 23 7.2e-06 0.0029 20.2 0.9 1 23 321 343 321 343 0.99 7 23 0.0081 3.2 10.6 2.0 1 23 414 436 414 436 0.97 8 23 0.0014 0.56 13.0 1.2 1 23 442 465 442 465 0.97 9 23 1.9e-05 0.0075 18.9 3.1 1 23 529 552 529 552 0.97 10 23 0.00049 0.19 14.5 4.4 1 23 558 580 558 580 0.99 11 23 0.011 4.5 10.2 1.7 1 23 603 625 603 625 0.95 12 23 0.0018 0.71 12.7 0.8 1 23 631 653 631 653 0.98 13 23 1e-05 0.004 19.8 5.3 2 23 663 684 662 684 0.97 14 23 0.0034 1.3 11.8 4.4 1 23 690 713 690 713 0.96 15 23 7.1e-05 0.028 17.1 0.0 1 23 745 767 745 767 0.98 16 23 0.0019 0.77 12.6 2.0 1 23 796 818 796 818 0.92 17 23 0.00015 0.061 16.1 3.8 1 22 836 857 836 857 0.95 18 23 0.0013 0.5 13.2 1.0 1 23 924 946 924 946 0.93 19 23 8.2e-06 0.0033 20.0 0.8 1 23 1057 1079 1057 1079 0.98 20 23 0.00013 0.051 16.3 2.1 1 23 1118 1140 1118 1140 0.97 21 23 0.00099 0.39 13.5 2.2 1 23 1146 1168 1146 1168 0.98 22 23 0.0033 1.3 11.9 2.1 1 23 1174 1197 1174 1197 0.97 23 23 0.00049 0.19 14.5 0.1 1 23 1203 1226 1203 1226 0.97
Sequence Information
- Coding Sequence
- atGCTGCTGGATATCAAGCAAGAGGAGATAGAAGAATGTGAACCAGAGCATCGAGAAAGTGCACATGTGATCATCAATGACCCATTGAGTTTCACATCAGAAGGTCACAGATTACAGCATTCCTCAGAATCTAACAGAATCTACCCAATAAGACAGAtcaagagtgaaccatttgattGTGAGGACAATGATATATCCATTACTGATGAAATGCATAGAAATGACAGTGCTGAGATTGTGTCACCAGATAATTTGGAGGATTTCTTGGAAGAGGAATTTGAAGACACAGGaaaagaaattgagaaagaagaaagagaagaaaatgggGTTGAAAGGAGATCAACAAGAAACAGAACTCTCTCAGTAAGAAACACTCCAAACTTTTATACAGATGATGATGTGTACTCTGATAAAGAAGCATACTTCTGTGTTCACTGCAATAAAGCATTTCCATTTAGGTCGTACTATTTGCGTCATCTCAAAGTACACAACAGAGATGAGTTTATGTGTACGCAATGCAATAAACAGTTTTCCTGCAAGCGCAATTTGGATAGACATGTCAGACTTCACCGAAGGATTCCTACTGGTGGCAAGAAGCTTTACCCATGTATATACTGCCCGGAGGTGTTTGACAATAGTGTGAAATATGCAAGGCATCGTAAGAACTGCAAGGGCCCAAATGCAGTACTAAAAGCTCCACCAAAAGCACGACCTCAGGAGTTGCAGGTAAAAGAGTCATTGGAAATTTTTAAATCTTTCTCAGAGGATAGTACAAACAGTGATGGAAAAACTACATTTCCATGCTACATATGTGAAAGAAATTTTAATAGTGTACATAAATTACAAACACATCGGAGGACACACAGCGATTTCAATTGTAATCGTTGTGGCAAATCATTTGATGGAGGCATTGCATTGAGCAACCATTTACGACGGCATAATTTTGATGGTTTTAAGCGTTATACTTGCAAAATATGCCAGAAGAACTTTACTAACATCAGTGCATTAGTCAGTCATAAAAGAATTCATACCTTGAGAGGTGAGACTCGGCAAATTGCTCCCTTGCCCCTCATTCCCAAGGCAAGAAGCTTACCACCTGCTAAAAATTTACCACCTCCGAAAAGCTTGCCATCCGCTAAAAGCTTGCCACCTGCCAGAAGTTTACCATCAGCCAAACCCTTATCAGCTACTAGTAAACTGATGAGCATGCATCCTGAAATTCCTGCACGAGGTGGTGGCTACAATTGTGCCATATGCCACAAATGGGTGAAAACTCGCTCAGTTCTCAAACGACATATGACAAGTCATACCAAGTTGAAACTGTTCAAATGTAGCATTTGTGATGTTTCCATGGGTTATGCTTCATCCTTGCATAAACACATGAGACTTACTCACAATATTGAGATTACATATGGAGATATTCGTCAGATGTTTGACATACCTGGTATTGAACAACAAGAGGCACTTGCAGTAGAGAAAGAACCACCAGTCAAGAAACAAGCACAGAAACCGAATCCTCCACCAGATACAACTCCTAAACCAAAGGGTGGCGAAatgaattcatttgtttcatcagctGGCAACTATCATTGTAACATATGTGAGAAGATTTTCACTAATAAACATCTGTTAAACAACCATGTGAAGATAATACACATGGGAGGTAAGGCTTataaatgcaatacttgctcAAAACTCTTTGCCTACAAACATCTGCTGGCAAAGCACTCGAGAACACATGCAGGTGGAGTCACCAGCAAGCTACAGCAAAAGCAGACGCCTGCCTATGAAGAGACAGCACAAGAATTTACCTGCAACGTCTGTTGTCGCTCTTTTCCAGATGCTAAGACCCTAAATAATCACAAAGGTGTTCATACACGCTTCAAATGCTACTCGTGTTCCATATGCTTAAAGACTTTTAATGGAATGAGAAACTGGGAGCAGCATCAGAAGCTTCATTCACTTCATTCTACCATTATCAACTGCAGATGCAAGCTTTgtgggaagaaattcacatcTCGCAGTGAACTGAATGAACACAAAAAGACTCACATCACATTAAAAATCTATACATGCGGTGTATGCAAGAATTCTTACAACAGTAGTTCATCATTAAACAAACACAAGCATCGCAAACATGGAGGTTTTGGAGACACAGAAGTCCGACAAATTGATAGTGGTGGTTCTATTATCGATGAAGTGATAAGTGATGTAGAAGAAGTAGACCGTTGCTATGTTTGTGATATATGCAATAAAGTATATGGAGATGAAGAAGAACTGGAAAATCACAAAATGATCCATGTGCAAAGAGTTACAGTTCCCAACAAAACTGTAGCTTCCAATAAAACCGGAGGTACTAACAAACATGCAGTTGTAAGAGCCGCATTTCATTGCGAGCTATGCAGGCGAAATTTTCCAGACCAGTCTTCACTCAGCAAGCATAAGGGTTGGCACTCGAGACGAAGTTTCACACATCCAATAGTAGTAACTGGGAAGAAGCGCTTGTATAATTGCAATTTCTGCCATAGAAGTTTCACAAACAGTGGGTCTCTCTCGAAGCATAAGCGGAAAAATTGCCCTCCTAAAAGATTCTACAAAGGAGATTTTGTGAATCCTTCAGTGCaagaacaacagcaacagcagcaccCAGAGGAGGAAGAAATGTTAGATGAAACGTCAGCCCCAGATTCACCTTCTGGTGCACTTCTTCCTTCACAACCACCAACAAGGATGCCACAAATAACTCTTGGCGCACAAAGGGTGAAGAAATTTCCATGTCCCTCATGTGAAAGACATTTTAATAACAAGCGTGCACTTGTTCGCCACAAGGGTTGGCACACACGTCAAGTTAAGCGGCAGTCAATAGCGGCAGCAGTAGAAAAAGTTGAAGAAACACCATCTTCATCTCCAATGCCACCagaaccatcatcaccatcaccaccagaaccatcaacaccatcaccaccagaacCTTCATCACCACTAGCTCCAgaatcatcatcaccagcacccccagaatcatcatcaccactaccatcaattGAATTTAATGAATCCAAGGAAACAAAGGATGAAAAAATAGAGGAAACTGAAGATAATGAGTTGCCAGAGTTGAAACCTGAAGAGAAGCCATTACCAAAACAGATGGATGGAGAGGTTAACAACAGATATCCGTGCAATGTCTGCTTCAAGGTTTACAGCTCTGCTTCAATGCTTAATAAGCACAAACGTCTACACAAACGTAAGGTGCTTCCAAACAAGGTAATTAAGCATTTAGAGTCTCCAGAACGAGAAAAACCACCTGTTTTACTACCTGAGCCACCTCCCATAGAAGGGAATGAGGAAGGTCTGCATCCATGCAGATACTGCAGCAAAGCTTTCACCTTTCGTCGCAACCTCATCGATCATGAACGGGTACATACAGGAGAGCGACCATTCTCCTGCAATGTATGTCATCTCACATTCTCTCGCCGTGCCATACTCTGGCGCCACAAGAAAGTGCATCTCGGTGTGCGTCCATTTTCATGTTCCATTTGTTCCAAATCTTTCCTTCTGAACTTCCAGCTGACACTTCACATGAGACAAAAGCACTCGGAAAAGGCTGCATACGAATGCGTGAAGTGTGACAAGGCACTGGACACAAGTGAAGCTCTTGAAAAGCATGAACTGACAGAACATAATGAATAA
- Protein Sequence
- MLLDIKQEEIEECEPEHRESAHVIINDPLSFTSEGHRLQHSSESNRIYPIRQIKSEPFDCEDNDISITDEMHRNDSAEIVSPDNLEDFLEEEFEDTGKEIEKEEREENGVERRSTRNRTLSVRNTPNFYTDDDVYSDKEAYFCVHCNKAFPFRSYYLRHLKVHNRDEFMCTQCNKQFSCKRNLDRHVRLHRRIPTGGKKLYPCIYCPEVFDNSVKYARHRKNCKGPNAVLKAPPKARPQELQVKESLEIFKSFSEDSTNSDGKTTFPCYICERNFNSVHKLQTHRRTHSDFNCNRCGKSFDGGIALSNHLRRHNFDGFKRYTCKICQKNFTNISALVSHKRIHTLRGETRQIAPLPLIPKARSLPPAKNLPPPKSLPSAKSLPPARSLPSAKPLSATSKLMSMHPEIPARGGGYNCAICHKWVKTRSVLKRHMTSHTKLKLFKCSICDVSMGYASSLHKHMRLTHNIEITYGDIRQMFDIPGIEQQEALAVEKEPPVKKQAQKPNPPPDTTPKPKGGEMNSFVSSAGNYHCNICEKIFTNKHLLNNHVKIIHMGGKAYKCNTCSKLFAYKHLLAKHSRTHAGGVTSKLQQKQTPAYEETAQEFTCNVCCRSFPDAKTLNNHKGVHTRFKCYSCSICLKTFNGMRNWEQHQKLHSLHSTIINCRCKLCGKKFTSRSELNEHKKTHITLKIYTCGVCKNSYNSSSSLNKHKHRKHGGFGDTEVRQIDSGGSIIDEVISDVEEVDRCYVCDICNKVYGDEEELENHKMIHVQRVTVPNKTVASNKTGGTNKHAVVRAAFHCELCRRNFPDQSSLSKHKGWHSRRSFTHPIVVTGKKRLYNCNFCHRSFTNSGSLSKHKRKNCPPKRFYKGDFVNPSVQEQQQQQHPEEEEMLDETSAPDSPSGALLPSQPPTRMPQITLGAQRVKKFPCPSCERHFNNKRALVRHKGWHTRQVKRQSIAAAVEKVEETPSSSPMPPEPSSPSPPEPSTPSPPEPSSPLAPESSSPAPPESSSPLPSIEFNESKETKDEKIEETEDNELPELKPEEKPLPKQMDGEVNNRYPCNVCFKVYSSASMLNKHKRLHKRKVLPNKVIKHLESPEREKPPVLLPEPPPIEGNEEGLHPCRYCSKAFTFRRNLIDHERVHTGERPFSCNVCHLTFSRRAILWRHKKVHLGVRPFSCSICSKSFLLNFQLTLHMRQKHSEKAAYECVKCDKALDTSEALEKHELTEHNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00434990; iTF_00955775; iTF_00821157;
- 90% Identity
- -
- 80% Identity
- -