Hcor048637.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hymenopus coronatus
Gene Symbol
-
Assembly
GCA_030762935.1
Location
CM060892.1:32503288-32524376[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.00042 0.18 15.0 3.5 1 23 219 241 219 241 0.97
2 23 0.011 4.6 10.5 5.2 1 23 246 268 246 268 0.97
3 23 0.097 42 7.5 0.1 1 21 279 299 279 300 0.92
4 23 0.00039 0.17 15.1 4.0 1 23 344 366 344 366 0.98
5 23 0.00068 0.29 14.3 0.3 1 23 369 391 369 391 0.98
6 23 5.5e-06 0.0023 20.9 0.9 1 23 399 421 399 421 0.99
7 23 0.011 4.5 10.6 2.0 1 23 486 508 486 508 0.97
8 23 0.0018 0.78 13.0 1.2 1 23 514 537 514 537 0.97
9 23 8.5e-06 0.0036 20.3 3.1 1 23 600 623 600 623 0.97
10 23 0.00064 0.27 14.4 4.4 1 23 629 651 629 651 0.99
11 23 0.015 6.4 10.1 1.7 1 23 674 696 674 696 0.95
12 23 0.00072 0.31 14.3 0.5 1 23 702 724 702 724 0.98
13 23 1.3e-05 0.0056 19.7 5.3 2 23 734 755 733 755 0.97
14 23 0.0044 1.9 11.8 4.4 1 23 761 784 761 784 0.96
15 23 9.3e-05 0.04 17.0 0.0 1 23 816 838 816 838 0.98
16 23 0.0013 0.55 13.4 1.7 1 23 861 883 861 883 0.92
17 23 2.5e-05 0.011 18.9 3.6 1 22 901 922 901 922 0.96
18 23 0.00047 0.2 14.8 1.1 1 23 985 1007 985 1007 0.93
19 23 0.00048 0.2 14.8 1.5 1 23 1102 1124 1102 1124 0.96
20 23 0.00017 0.072 16.2 2.1 1 23 1163 1185 1163 1185 0.97
21 23 0.0013 0.55 13.4 2.2 1 23 1191 1213 1191 1213 0.98
22 23 0.0043 1.8 11.8 2.1 1 23 1219 1242 1219 1242 0.97
23 23 0.00032 0.14 15.4 0.2 1 23 1248 1271 1248 1271 0.97

Sequence Information

Coding Sequence
ATGTTATCTCATCTAAACGCTGGAGAGGAACAGCCATCCGAGCAATTACCTGAAGATGTCTCAGTTGCAGAAATAGAACCACCGCTTGAACAATCTTCAATTGATGAAACTGAGCATGAAGCGATACATGAATCAGAGTCATCTCAGCTTGTGCAAGTTAAAGAGGAGCCCCCGGATGAAGTATATATGGAAATGGATATGCATAGCTCACAAGAGTTGAGTGAGAATTCTGTAGACAATAACATGCTGATGGATATCAAGCAGgaggagatagaagaatgtgGGCCAGAGCAACGAGAAATTGCACATGTGATCATCGATGATCCACTGAGTTTCACCTCAGATAGTCACAGATTGCATCATGTCTCAGATTCTAACAGAGTCTACCCAGTAAGACAGATCAAGAATGAACCTTTTGATTGTGAAGACAATGATATATCTATTACTGATGAAATGGATGGAAATGATACTGCAGAGATTGTGTCACCAGATAACATGGAGGATCTCTTGGAAGAGGAATATGAAGATGCGAGAGATGAAACTGAGAAAGAAGAAAATGGAATTGAAAGAAGATCAACAAGAAATAGAACTCTCTCAATAAGGAACACACCAAACTTTTATGCAGATGATGATGTGtattctgataaagaggcatacTTCTGTGTTCACTGCAATAAGGCGTTTCCATTTAGGTCGTACTATTTGCGTCATCTCAAAGTACACAGTAGAGATGACTTTATGTGTACACAGTGCAATAAGCAGTTTTCCTGCAAGCGCAATTTGGATAGACATGTCAGACTTCACCGAAGGATCCCTGCTGGTGGCAAGAAACTTTATCCATGTATATACTGCCCGGAGGTATTTGACAATAGTGTGAAATATGCAAGGCATCGTAAAAACTGTAAGGGCCCAAATGCAGTACCAAAATCTCCACCAAAATTGCGGCCTCAGGAGTCCCAAGTAAAAGAGTCAATGGAAATGTTTAAGCCCTTCTCAGAGGATAGTACAAACAGTGATGAAAAAGCTACATTTCCATGTTATATATGTAACAGAAATTTTAATAGTGTGcataaattacaaacacatcGGAGGACACACAACGATTTCAATTGCAACCGTTGTGGCAAATCATTTGACGGAGGTATTGCACTGAGCAACCACTTACGACGGCATAATTTTGATGGTTTTAAGCGTTATACTTGCAAGATATGCCAGAAGAATTTTACTAACATCAGTGCGTTGATCAGTCATAAAAGAATACATACATTGAGAGGCGAGACTCGGCAGCATGCCCCCGTACCCATCATTCCAAAGTCAAAAAGCTTACCACCTGCCAAAAGCTTGCCATTTGCCAAAAACTTTCCACTTGCCAAAAGCATAGCATCAGCCAAAACCTTATCTGCTACTAATAAGCTGATGAGCATGCATCCTGAAATTCCTGCACGTGGTGGTGGCTACAATTGTGCTATCTGCCACAAATGGGTGAAAACTCGCTCTGTTCTGAAACGACATATGACAAGTCATACAAAGTTGAAGCTCTTCAAATGTAGCATTTGCGATGTTTCAATGGGTTATGCATCGTCATTGCATAAGCACATGAGACTTACTCACAATATTGAGATTACATATGGAGACATTCGTCAGATGTTTGATGTACCCGCTCTTGAACAGCAAGAGGCAATTGCAATCGAGAAAGACCCACCAGTCAGAAAACAAGCACCGAAGCAAAATCCTGTACCAGATACAACTAAACAAAAGGGTGGCGAAATGAATTCATTCCTTTCAGTAGTTGGTAACTATCATTGCAACATATGTGAAAAGGTATTTACTAATAAACATCTCTTAAACAATCATGTGAAGATAATACACATGGGAGGTAAGGCTTATAAATGCAACACCTGCTCAAAACTCTTTGCCTATAAGCACTTGTTGGCAAAGCACTCAAGAACACATGCAGGTGGAGTCACCAGCAAGCTACAGCAAAAGCAGACGCCTGCCTATGAAGAGGCAGGACAAGAATTTACTTGCAACGTCTGCTGCCGCTCTTTCCCTGATGCAAAGACGCTAAATAATCACAAAGGTGTTCATACACGATTCAAATGCTATTCATGTCCCATTTGCTTGAAGACTTTCAATGGAATGCGAAATTGGGAGCAGCATCAGAAGCTTCATACACTTCATTCTTCCATTATCAATTGCAGATGCAAGCTTTGTGGGAAGAAATTCACATCTCGCAGTGAACTGAATGAACACAAAAAGACTCACATCACATTAAAAATCTATACTTGTGGGGTATGTAAGAATTCATACAATAGTAGTTCATCATTAAACAAACATAAGCATCGCAAACATGGAGGGTTTGGGGATACAGAAGTACGTCAGATTGATAGTGGTGGTTCCATTATTGATGAAATGATGAGTGATGTAGAAGAAGTAGACCGTTGCTATGTGTGTGATATATGCAATAAGGTTTACGGAGATGAAGAAGAATTGGAAAATCACAAAATGATCCATGTGCAGAGAGTTGCAGCTCCCAACAAAACTGCAGCTACCAACAAAAATGCAGCTTCGAAAGGACCATTTCATTGCGAAGTGTGTAGACGAAACTTTCCTGACCAGTCTTCACTCAGCAAGCATAAAGGTTGGCATTCAAGACGAAGTTTAACACATCCAATAGTCGTAGCTACAAAGAAACGACTATATAGTTGTAATTATTGCCATAGAAGTTTCACTAACAGTGGGTCTCTCTCAAAGCATAAGCGGAAAAATTGCCCTCCCAAAAGGTTCTACAAAGGGGATTTTGTGACTACTTCAGTGCAGGAAGAGCAGCAACCAGAAGAGGAAGAAATGTTAGATGAAACCTCAGCGCCAGATTCACTTTCTGATGCACTTCCATCACATCCTCAAGCAAAAATGCCACAAATAACTCTTGGCGCACAGAAGGTGAAGAAATTTCCATGTCCCTCTTGTGACcgacattttaataacaaacgtGCACTTGTCCGCCACAAGGGTTGGCACACACGTCAAGTTAAACGGCAGTCATTGGCAATAGCAGAAAAAGCTGAAGAAACACCATCTTCATCTCCACTGCCACCAgaaccatcatcaccatcaccaccagagtcatcatcaccaccacctctcCCACAATCGTCACCATTACCATCATCAATTGAGTTATCTGAATCCAAGGAAACAAAGGATGAAGCAATGGAGGAAACTGACCTTGATGAGTTGCCAGAAATGAAGTCTGAGGAAGAACCATCCCCAAGACAGACTGATGGAGAGGCTAACAGCAGATATCCATGCAACATCTGCTTCAAGGTGTACAGCTCTGCTTCAATGCTTGACAAGCACAAACATCTACACAGGCGTAAGATGCTTCCAAACAAGGCAGTAAAGCATTCAGATTTTTCAGAACCAGAAAAACAACCTGTTATACTATCTGATCCACCTCCTGTAGAAGGGAATGAGGAAGGCCTACATCCATGCAGATACTGCAGTAAAGCATTCACCTTTCGTCGCAATCTCATTGATCATGAACGGGTGCATACAGGAGAGCGACCTTTCTCCTGTAATGTATGTCATCTCACATTTTCTCGCCGTGCCATACTCTGGCGCCACAAGAAAGTGCATCTTGGTGTGCGTCCATTTTCATGTTCCATTTGTTCTAAATCTTTCCTTCTGAACTTCCAACTAACCCTTCACATGAGACAAAAACATTCACAGAAGGCTGCATATGAGTGCATGAAGTGTGACAAGACATTGGACACAAGTGAAGCTCTTGAAAAGCATGAACTGACGGATCATAATGAATGA
Protein Sequence
MLSHLNAGEEQPSEQLPEDVSVAEIEPPLEQSSIDETEHEAIHESESSQLVQVKEEPPDEVYMEMDMHSSQELSENSVDNNMLMDIKQEEIEECGPEQREIAHVIIDDPLSFTSDSHRLHHVSDSNRVYPVRQIKNEPFDCEDNDISITDEMDGNDTAEIVSPDNMEDLLEEEYEDARDETEKEENGIERRSTRNRTLSIRNTPNFYADDDVYSDKEAYFCVHCNKAFPFRSYYLRHLKVHSRDDFMCTQCNKQFSCKRNLDRHVRLHRRIPAGGKKLYPCIYCPEVFDNSVKYARHRKNCKGPNAVPKSPPKLRPQESQVKESMEMFKPFSEDSTNSDEKATFPCYICNRNFNSVHKLQTHRRTHNDFNCNRCGKSFDGGIALSNHLRRHNFDGFKRYTCKICQKNFTNISALISHKRIHTLRGETRQHAPVPIIPKSKSLPPAKSLPFAKNFPLAKSIASAKTLSATNKLMSMHPEIPARGGGYNCAICHKWVKTRSVLKRHMTSHTKLKLFKCSICDVSMGYASSLHKHMRLTHNIEITYGDIRQMFDVPALEQQEAIAIEKDPPVRKQAPKQNPVPDTTKQKGGEMNSFLSVVGNYHCNICEKVFTNKHLLNNHVKIIHMGGKAYKCNTCSKLFAYKHLLAKHSRTHAGGVTSKLQQKQTPAYEEAGQEFTCNVCCRSFPDAKTLNNHKGVHTRFKCYSCPICLKTFNGMRNWEQHQKLHTLHSSIINCRCKLCGKKFTSRSELNEHKKTHITLKIYTCGVCKNSYNSSSSLNKHKHRKHGGFGDTEVRQIDSGGSIIDEMMSDVEEVDRCYVCDICNKVYGDEEELENHKMIHVQRVAAPNKTAATNKNAASKGPFHCEVCRRNFPDQSSLSKHKGWHSRRSLTHPIVVATKKRLYSCNYCHRSFTNSGSLSKHKRKNCPPKRFYKGDFVTTSVQEEQQPEEEEMLDETSAPDSLSDALPSHPQAKMPQITLGAQKVKKFPCPSCDRHFNNKRALVRHKGWHTRQVKRQSLAIAEKAEETPSSSPLPPEPSSPSPPESSSPPPLPQSSPLPSSIELSESKETKDEAMEETDLDELPEMKSEEEPSPRQTDGEANSRYPCNICFKVYSSASMLDKHKHLHRRKMLPNKAVKHSDFSEPEKQPVILSDPPPVEGNEEGLHPCRYCSKAFTFRRNLIDHERVHTGERPFSCNVCHLTFSRRAILWRHKKVHLGVRPFSCSICSKSFLLNFQLTLHMRQKHSQKAAYECMKCDKTLDTSEALEKHELTDHNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01410918;
90% Identity
-
80% Identity
-