Tsin023784.1
Basic Information
- Insect
- Tenodera sinensis
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_030765045.1
- Location
- CM060963.1:135975535-136069263[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.2e-28 5.6e-24 87.3 12.6 1 91 253 348 253 348 0.87 2 3 1.7e-24 7.8e-20 73.7 3.4 135 223 343 439 341 443 0.90 3 3 3.8e-20 1.7e-15 59.4 0.6 234 300 503 574 500 574 0.83
Sequence Information
- Coding Sequence
- ATGGGGAACTCTGCAGGAAACGAGGAGGTAAGGCATGAGGAAGAGCAAACGGCAGTGCAGGACGGTGCGACCATGAACGCACACTACGATAATGCGGGCAGTGCCACCGGTAGCGACACAAAGCAACAGAAAGTGGAACACGTTTCCGAACAAAATAACATTAATGGGAACCAAGGTAACAGTGTGGACCCAACCGTTGATAACTCCAGTGACGACTTAGATCAAATATTTGAGGACCTTGATAGTGACGGAGAAAAAGGTGTTGATAACAGCATTGGAGAAGGGAACATTGGTGGCGCTGATCATAGAGACATAAAGGAGGGAATGAACAGTGATACGGACCATGTAAACGAATCAAACTATAGTGACGGATTTACCGGAGGGGATACTGACACAAGTCAAGCTGATAAAACTGCTACGTGCACTACTGCGAAAGAAGGGAAGGACGAACTTCATAGTGACATTGACAACGCTGACGCTTACACTCTGTGTGATAGTCATAGCAACGAGGTTGAAGTTCACAGCGAAGGAgataccaaagttgatattcagCCTAATGAATTGAGGAATGCAGATATTCTCATTAAGGATCAGCTGGAGCAGGATAAGGTGGACTTTGTTACCAAGAAAAGCTCTGGAAATGCCTCAGAAGAGCGAATCAGGAAAAAGAATAACAGCGCGACCTGGAACTCGGGTGAAGAACTCGAAGACGACGATGCTTTCATCTTCGATTACCTGGATAAGAGTAACGATAAGGCAGAAGCTCGACTGGCTGCACGTCGACAAGCCAGAGCAGAGGCGAGAGAGATCCGTATGCGAGAGCTCGAACGTCAACAGAAGGAGAATGAGGAAAACCACGATTCTGTGTATGATATGTACAGTAGAGGAATTTACACTGTCATAGACACTCCGAGCCGTACTGCAAGAGTGGCTTCCACCATGAGGACTGCATCGCACAGTGGTACCAACAGCTACCATTCAAGTCGACGTAGTTCTGAAGACTCCTTAGAGGAAGGCATCAGCTTAAGGGATGTACGACGTGAACATCGGGAGAAGTGCAGGGAGCATGATCAGCTGAAGCGAGCTgcagcaaaattaaaagaagaccTGGACTTCTGCAGAGTGCAACTTGAAGAAAGAGATAGGCTTATTCAGgAGCACGGTCTTATGATAGTAGGAGATGAACAGGTTTCCAGTGAAGAAGAAAACAGTAATGAAGATGGTGTTACATCTACAAAGAAAACACCACATAGAGCACTAGTGTCTATAGAATCAGCCGAGTTGCTTAATAGTGCTGGTGAAGGTTCATTAGGGCAGCCCCTGGATGTGGTAAACTGCATCATGATCCTCTTATCGTCCACTGCGGGCCTTCCTGCACCCACGGGGTTCCATGACTACGGACCTCTCCTAGTGTACCTTTGCAAACACCTTGCTCCTGGTGGGTCTAAATGTAACCATCTCCAAGTTCACCCTACAGACCCCAAACATATTCACTGGGGCTTCAAAGCGTTATCTTACCAGGTGCGGCATCTTAAGTTGGAACTGGAAGAAGAGCGAAGTAGGCACAAATCACAGCACCACCGTCTTTCTTCTGGTACTTCTGCCTCCACAGCTAGCCTTAATGGTCCTGATACTGATCTCGTGGATTTACAGCGAGAAGCCAACAAACAGTTAGGTGATTACAAATTCAAGCTTCAGAAAGCAGAACAAGATGTGTCAACGTTGCAGGCCAATGTAAGTATTGCTGTTAAGAGCTTGTATCACTGA
- Protein Sequence
- MGNSAGNEEVRHEEEQTAVQDGATMNAHYDNAGSATGSDTKQQKVEHVSEQNNINGNQGNSVDPTVDNSSDDLDQIFEDLDSDGEKGVDNSIGEGNIGGADHRDIKEGMNSDTDHVNESNYSDGFTGGDTDTSQADKTATCTTAKEGKDELHSDIDNADAYTLCDSHSNEVEVHSEGDTKVDIQPNELRNADILIKDQLEQDKVDFVTKKSSGNASEERIRKKNNSATWNSGEELEDDDAFIFDYLDKSNDKAEARLAARRQARAEAREIRMRELERQQKENEENHDSVYDMYSRGIYTVIDTPSRTARVASTMRTASHSGTNSYHSSRRSSEDSLEEGISLRDVRREHREKCREHDQLKRAAAKLKEDLDFCRVQLEERDRLIQEHGLMIVGDEQVSSEEENSNEDGVTSTKKTPHRALVSIESAELLNSAGEGSLGQPLDVVNCIMILLSSTAGLPAPTGFHDYGPLLVYLCKHLAPGGSKCNHLQVHPTDPKHIHWGFKALSYQVRHLKLELEEERSRHKSQHHRLSSGTSASTASLNGPDTDLVDLQREANKQLGDYKFKLQKAEQDVSTLQANVSIAVKSLYH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -