Tsin019590.1
Basic Information
- Insect
- Tenodera sinensis
- Gene Symbol
- -
- Assembly
- GCA_030765045.1
- Location
- CM060963.1:1843880-1845950[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-07 0.00026 22.9 0.0 5 38 1 33 1 35 0.95 2 2 5.4 9e+03 -1.2 0.0 11 23 118 131 116 132 0.73
Sequence Information
- Coding Sequence
- ATGACAGAAGCAGTCAAATATGTTCAGGAAGGAGGAAGCCAGAAGAAAgcttctttgttattttgtgttcCTCGACAAACTTTAAGAAGGCATCTTGAAGTACTCAAGAATGGTGGTAGTATTGTTAAATCACTGGGGAGGAAAACAGTATTGAGTGAGAAGCAAGAAAAGGAACTGGTCGATATTTTGCTTGATATGGAGGCCAGACTTTATGGTCTAACTCCTATGCGTGTTCGATACTATGTGTATCAATATTGTGAAGCAAATTCCATTATACATCCATTTAATAGAGAGAAATTAAGAGCAGGTTGGGATTGGCTCAAAGGATTTCTCAATAGGCATCCTATCCTGGCCATTAGACGTCTGCAAGGAACTTCGATTCAGAGAGCCCAAGGTTTCAATAAGGCTAAAGTCGATCTGTTCTATGAAAATTTGCAGGGGGTTTTGTATGATGAAAGTGGTAAAAGACTGATTCCTCCAGATCAGATATACAACTGTGATGAATCTGGGTATACGGTTGTGCATAAACCTCCACGAATCATTTCACAGAAAGGAAAAAGGACTGTTGGAGCTCTAACTAGTGCAGAGAAGGGGAAGACTGTTTCAGTTTTGGTATGCACAAATCCTGCTGGCCATTATATACCACCCCTGTTTCTATTTCCTAGAGTTAGGATGAAGCCTGTGCTCCTGGACAAGGCACCTGTTGGAAGTATAGGCATTGCTACAAAAACAGGATGGATCTCGAGTGAGCCATTTGCTGTATGGTTTGACAATTTTTTAGAGAAAGTACAGCCAAAAAATAAAGCAGCACCTACACTTCTAATTCTTGATGGACATAAGAGCCATACAAGAAACCTAAAAGTTGTATTTAAAGCCAAAGAAAATAATGTGCAGATCCTTTGCCTACCTTCACATTGTACACATAAGCTGCAGTCATTAGATGTCGCTGTCTTCAGGGGCATCAATCATCACTATGATGAAGAAGTACAAACCTGGATTTTAAACAACCCAGGTAGAGCTGTTACTGAAAATGACATTCCTGGAATTTTTGCAATAGCATATGCCAAAGATGCATCAATGAAGAACGCTGAATCGGGGTTCAGGAAAGCAGGCATTCAGCCCTTAACAGGAACATTTTTGAGCCTGTTCTGGGCTGGAGACACGATTGATGATTCTGAAATACCATCCAACTTTGGAGCTGACAGCACaaatagttcagaatttcaaagcacCTCTGAACACAAAATTGCCCAGTCTCCACTTCATGTCCATGATGGTGATAACCCTGGTTCCTGTTTTGTAGACAAAGTTCCTCTGTCTCCAATTCATATCCTGGTTACTGATAATCATGTTCCCTCTTCCGAAGACAAATATCTTCAGTCTGCAACTCATGACGTCACTGCTGATAACCCAGATCCCTCTTCTGAACACTCAGATCCCCAGTTTACAGTTCATGATCTGATTACTGATAGCCCAGGTCCTTCTTCAGCTCCATCTCATGTTCTCCAAACCCCCTCATCTGGTCAAATTCCTATTCCTTCAGATGGTGTAGCCTCCCCAAATTCCTCTGATTCTTCGTGCTTAAACACCTCCTTTCGTGATTTGATTCAGATACCTAAAAAGGGACTAAAGGAAGAGCAAAATGTCAGAAAGAGGAAAGTTCAGCATTCATTTCTGGTGACAGGAACACCACACAAAATTGTACTGGAAGAAGTGGAgataaatgaagaaagaaaggaaaagaaaaaacaagagCGGCTGctaaaatcaaagaaaaaattgaatttaaaaacaaaaaacactgcAACGAAAACTATTGTAAAGAAGCAGAAAGAGTCTAAGAAGGCAAAGTCAAAGGTTTCCAAAGCAACAATTAATGACGACGCTGAATGCCTTTATTGCGGTGAGCTGTATTCAAGTAGTACAGAAGTATGGGTTTGTTGCCAGTCATGTGGAGAATGGGCCCACAAAAACTGCAGCAGCTTTGACGAAGTGAAAAACACCTTTGTTTGTGAATTTTGTGCCTCCAATTAG
- Protein Sequence
- MTEAVKYVQEGGSQKKASLLFCVPRQTLRRHLEVLKNGGSIVKSLGRKTVLSEKQEKELVDILLDMEARLYGLTPMRVRYYVYQYCEANSIIHPFNREKLRAGWDWLKGFLNRHPILAIRRLQGTSIQRAQGFNKAKVDLFYENLQGVLYDESGKRLIPPDQIYNCDESGYTVVHKPPRIISQKGKRTVGALTSAEKGKTVSVLVCTNPAGHYIPPLFLFPRVRMKPVLLDKAPVGSIGIATKTGWISSEPFAVWFDNFLEKVQPKNKAAPTLLILDGHKSHTRNLKVVFKAKENNVQILCLPSHCTHKLQSLDVAVFRGINHHYDEEVQTWILNNPGRAVTENDIPGIFAIAYAKDASMKNAESGFRKAGIQPLTGTFLSLFWAGDTIDDSEIPSNFGADSTNSSEFQSTSEHKIAQSPLHVHDGDNPGSCFVDKVPLSPIHILVTDNHVPSSEDKYLQSATHDVTADNPDPSSEHSDPQFTVHDLITDSPGPSSAPSHVLQTPSSGQIPIPSDGVASPNSSDSSCLNTSFRDLIQIPKKGLKEEQNVRKRKVQHSFLVTGTPHKIVLEEVEINEERKEKKKQERLLKSKKKLNLKTKNTATKTIVKKQKESKKAKSKVSKATINDDAECLYCGELYSSSTEVWVCCQSCGEWAHKNCSSFDEVKNTFVCEFCASN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01410722;
- 90% Identity
- iTF_01410722;
- 80% Identity
- -