Tsin047874.1
Basic Information
- Insect
- Tenodera sinensis
- Gene Symbol
- -
- Assembly
- GCA_030765045.1
- Location
- CM060966.1:1185663-1187779[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.2e-08 0.00012 24.0 0.0 4 38 15 48 14 50 0.94 2 2 5.5 9.2e+03 -1.3 0.0 11 23 133 146 131 147 0.73
Sequence Information
- Coding Sequence
- ATGTCCAGTAATAAACGTAAACGTGGAGACTGGTCTGTACAGTCTATGACAGAAGCAGTCAAATATGTTCAGGAAGGAGGAAGCCAGAAGAAAgcttctttgttattttgtgttcCTCGACAAACTTTAAGAAGGCATCTTGAAGTACTCAAGAATGGTGGTAGTATTGTTAAATCACTGGGGAGGAAAACAGTATTGAGTGAGAAGCAAGAAAAGGAACTGGTCGATATTTTGCTTGATATGGAGGCCAGACTTTATGGTCTAACTCCTATGCGTGTTCGATACTATGTGTATCAATATTGTGAAGCAAATTCCATTATACATCCATTTAATAGAGAGAAATTAAGAGCAGGTTGGGATTGGCTCAAAGGATTTCTCAATAGGCATCCTATCCTGGCCATTAGACGTCTGCAAGGAACTTCGATTCAGAGAGCCCAAGGTTTCAATAAGGCTAAAGTCGATCTGTTCTATGAAAATTTGCAGGGGGTTTTGTATGATGAAAGTGGTAAAAGACTAATTCCTCCAGATCAGATATACAACTGTGATGAATCTGGGTATACGGTTGTGCATAAACCTCCACGAATCATTTCACAGAAAGGAAAAAGGACTGTTGGAGCTCTAACTAGTGCAGAGAAGGGGAAGACTGTTTCAGTTTTGGTATGCACAAATCCTGCTGGCCATTATATACCACCCCTGTTTCTATTTCCTAGAGTTAGGATGAAGCCTGAGCTCCTGGACAAGGCACCTGTTGGAAGTATAGGCATTGCTACAAAAACAGGATGGATCTCGAGTGAGCCATTTGCTGTATGGTTTGACCATTTTTTAGAGAAAGTACAGCCAAAAAATAAAGCAGCACCTACACTTCTAATTCTTGATGGACATAAGAGCCATACAAGAAACCTAAAAGTTGTATTTAAAGCCAAAGAAAATAATGTGCAGATCCTTTGCCTACCTTCACATTGTACACATAAGCTGCAGTCATTAGATGTCGCTGTCTTCAGGGGCATCAATCATCACTATGATGAAGAAGTACAAATCTGGATTTTAAACAACCCAGGTAGAGCTGTTACTGAAAATGACATTCCTGGAATTTTTGCAATAGCATATGCCAAAGGTGCATCAATGAAGAAAGCTGAATCGGGGTTCAGGAAAGCAGGCATTCAGCCCTTCAACAGGAACATTTTTGGTGACAGTGATTTTCTTGGTGCAGAAGTGTCTCACAGAGCCTGTTCTGGGCTGGAGACACGATTGATGATTCTGAAATACCATCCAACTTTGGAGCTGACAGCACaaataTCTCCACTTCATGTCCATGATGGTGATAACCCTGGTTCCTGTTTTGTAGACAAAGTTCCTCTGTCTCCAATTCATATCCTGGTTACTGATAATCATGTTCCCTCTTCCGAAGACAAATATCTTCAGTCTGCAACTCATGACGTCACTGCTGATAACCCAGATCCCTCTTCTGAACACTCAGATCCCCAGTTTACAGTTCATGATCTGATTACTGATAGCCCAGGTCCTTCTTCAGCTCCATCTCATGTTCTCCAAACCCCCTCATCTGGTCAAATTCCTATTCCTTCAGATGGTGTAGCCTCCCCAAATTCCTCTGATTCTTCGTGCTTAAACACCTCCTTTCGTGATTTGATTCAGATACCTAAAAAGGAACTAAAGGAAGAGCAAAATGTCAGAAAGAGGAAAGTTCAGCATTCATTTCTGGTGACAGGAACACCACACAAAATTGTACTGGAAGAAGTGGAgataaatgaagaaagaaaggaaaagaaaaaacaagagCGGCTGctaaaatcaaagaaaaaattgaatttaaaaacaaaaatcactGCAACGAAAACTATTGTAAAGAAGCAGAAAGAGTCTAAGAAGGCAAAGTCAAAGGTTTCCAAAGCAACAATTAATGAAGACACTGAATGCCTTTATTGCGGTGAGCTGTATTCAAGTAGTACAGAAGTATGGGTTTGTTGCCAGTCATGTGGAGAATGGGCCCACAAAAACTGCAGCAGCTTTGACGAAGTGAAAAACACCTTTGTTTGTGAATTTTGTGCCTCCAATTAG
- Protein Sequence
- MSSNKRKRGDWSVQSMTEAVKYVQEGGSQKKASLLFCVPRQTLRRHLEVLKNGGSIVKSLGRKTVLSEKQEKELVDILLDMEARLYGLTPMRVRYYVYQYCEANSIIHPFNREKLRAGWDWLKGFLNRHPILAIRRLQGTSIQRAQGFNKAKVDLFYENLQGVLYDESGKRLIPPDQIYNCDESGYTVVHKPPRIISQKGKRTVGALTSAEKGKTVSVLVCTNPAGHYIPPLFLFPRVRMKPELLDKAPVGSIGIATKTGWISSEPFAVWFDHFLEKVQPKNKAAPTLLILDGHKSHTRNLKVVFKAKENNVQILCLPSHCTHKLQSLDVAVFRGINHHYDEEVQIWILNNPGRAVTENDIPGIFAIAYAKGASMKKAESGFRKAGIQPFNRNIFGDSDFLGAEVSHRACSGLETRLMILKYHPTLELTAQISPLHVHDGDNPGSCFVDKVPLSPIHILVTDNHVPSSEDKYLQSATHDVTADNPDPSSEHSDPQFTVHDLITDSPGPSSAPSHVLQTPSSGQIPIPSDGVASPNSSDSSCLNTSFRDLIQIPKKELKEEQNVRKRKVQHSFLVTGTPHKIVLEEVEINEERKEKKKQERLLKSKKKLNLKTKITATKTIVKKQKESKKAKSKVSKATINEDTECLYCGELYSSSTEVWVCCQSCGEWAHKNCSSFDEVKNTFVCEFCASN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01410724;
- 90% Identity
- iTF_01410724;
- 80% Identity
- -