Tsin031657.2
Basic Information
- Insect
- Tenodera sinensis
- Gene Symbol
- -
- Assembly
- GCA_030765045.1
- Location
- CM060964.1:139348182-139349888[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.6e-10 4.4e-07 31.8 0.0 3 42 20 60 18 63 0.90
Sequence Information
- Coding Sequence
- ATGCCACGTGTGTACAAAAGAAGTTTGGGAAGCCAAATGTACTgcaactatgaagaaaagaaacttgatgaagcagtaaaagcaattaaatcagggAAAATGTTGTATCGAAAAGCACAGGAGTATTTTCAGATACCGCAATCCACGTTAGAGAATAAACTGAATCGCACAAATCCAAAAGCAATCAGAACACCATCTGTCCTGGATaatgaagaagagaaaatgttGGTACATGGTATCCTTAGAGCATCTCATTGGGGATACCCTCTCACTTCAACTGACATTCGCTGCATTGTAAAAGGATACCTTGACAGAATGGGAAGAAAGGAGAAACGATTTACCGAGAATCTCCCTGGTGTTGAATGGATAAGGTCCTTTTTGAAAAGGCATTCTAATGTTCTTTCAGTTCGATTATCCGAGAACATCAAAAGAGCTCGTGCAGAGGTCACCCTTGAGACCGTCAGGGGATTTTTTGATAATGTGCGGGAGACCTTAGAAGGTACTCCACCGGAAAACATCATAAACTATGACGAGCCAAATTTATGTGATGATCCGGGAAGGAAACATGTGATTGTTAAGAGAGGCATTAAGCATGCAGAGAGGATAATGGATTTCTCTAAAGCAAGCATTTCTCTCATGATGTGTGTTAGTGGAGACGGAAAACTACTTCCTCCACATATCCTATATAAGGCTGAGCATTTATGGGACACCTGGCAGGAAGGAGGGCCACTGAATGCAAGATACAACAGAAACAAGAGTGGGTGGTTTGATCTtccaatttttgaagattggtttCTAACAGTGCCATTGCCTTATTTGAAAAAGCTAAGCGGAAGGAAAATCATAATTGGTGATAATTTGTCAAGCCATGTATCTCTGTTAGTGATTGAGCAATGTGAGAAGCACAACATCTCATTCATTCTTCTTCCCCCGAATAGCACGCACATCCTACAGCCCCTAGACGTGTGTTTTTTCGGGCCCTTTAAAAAGGCTTGGAGAGACGTGCTGACAAACTGGAAAATGTGCACACGTGGCCCTATCTCTAGAGATGCCTTCCCTGCACTTCTCAGAGAGACATTGGAGAAGATAGAAGCACAGAAAGTAGACAACATAAGAAGTGGTTTCTGCGCTACGGGTCTAATTCCCTTCGATCCACAGAAGGTCCTCAACAAATTTCCAGAGCATTCAGACCCAATTGAAAAGGCATCATCTTGGTCTTCCAGTTTCGAGACGGTACTCTCAGCAGCACGATATGGTACTTCCACCAGAACCACATACCGGCGTCGCAAGCTGAATGTTCCTTCAGGAAAATCTATTGTGGGTGATGATCTTGCTGGAAAGGAAATTAGTGAGGAAAACCAGCAAGATTGTCACGAGAATTTGGAAGATCAGAATACTCCCATGCCAGCAGAGGATTCCACACCAGCATCGGCACCTActcttgacatcgaaacttttgTTGTCGTGAGGTACAACTACgtgtctggaaacagaacacttcctAGAGAGTATGTTGGTGTGGTAACTGATATAGGAGCACGAGACGTGGTTGTGAAATTTTTGCGACCCCATGATGGAAGCAAGAGGATGTTCACATTCCCAGATGTAGAGGACGAAGCCACAGTAACGAAAGATCAGATCAGTAAAATACTTCCAGCACCCAAggagaaaagaggcatttttgtttttgataaggaTGCTCTATAA
- Protein Sequence
- MPRVYKRSLGSQMYCNYEEKKLDEAVKAIKSGKMLYRKAQEYFQIPQSTLENKLNRTNPKAIRTPSVLDNEEEKMLVHGILRASHWGYPLTSTDIRCIVKGYLDRMGRKEKRFTENLPGVEWIRSFLKRHSNVLSVRLSENIKRARAEVTLETVRGFFDNVRETLEGTPPENIINYDEPNLCDDPGRKHVIVKRGIKHAERIMDFSKASISLMMCVSGDGKLLPPHILYKAEHLWDTWQEGGPLNARYNRNKSGWFDLPIFEDWFLTVPLPYLKKLSGRKIIIGDNLSSHVSLLVIEQCEKHNISFILLPPNSTHILQPLDVCFFGPFKKAWRDVLTNWKMCTRGPISRDAFPALLRETLEKIEAQKVDNIRSGFCATGLIPFDPQKVLNKFPEHSDPIEKASSWSSSFETVLSAARYGTSTRTTYRRRKLNVPSGKSIVGDDLAGKEISEENQQDCHENLEDQNTPMPAEDSTPASAPTLDIETFVVVRYNYVSGNRTLPREYVGVVTDIGARDVVVKFLRPHDGSKRMFTFPDVEDEATVTKDQISKILPAPKEKRGIFVFDKDAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01410685;
- 90% Identity
- iTF_01410718;
- 80% Identity
- -