Tsin003108.1
Basic Information
- Insect
- Tenodera sinensis
- Gene Symbol
- -
- Assembly
- GCA_030765045.1
- Location
- CM060961.1:107917310-107919002[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.3e-14 7.2e-11 43.9 0.0 3 41 20 59 18 61 0.93
Sequence Information
- Coding Sequence
- atgccacgtgtgtacaaaagaagattgggaagccaaatgtactgcaactatgaagaaaagaaacttgatgaagcagtaaaagcaattaaatcagggAAAATGTCGTATCGAAAAGCACAGGAGTACTTTCAGATACCGCGATCCACGTTAGAGAATAAAGTGAATCGCACAAATCCTAAAGCAATCGGAACACCATCTGTCCTGGATaatgaagaagagaaaatgttGGTACATGGTATCCTTAGAGCATCTCATTGGGGATACCCTCTCACTTCAACTGACATTCGCTGCATTGTAAAAGGATACCTTGACAGAATGGGAAGAAAGGAGAAGCGATTTACCGACAATCTCCCTGGTGTGGAATGGATAAGGTCCTTTTTGAAAAGGCATTCTAATGTTCTTTCAGTTCGATTATCCGAGAACATCAAAAGAGCTCGTGCAGAGGTCACCCTTAAGTCTGTCAGGGGATTTTTTGATAATGTGCGGGATACCTTAGAAGGTACTCCACCAGAAAACATCATAAACTATGACGAGACAAATTTTTGTGATGATCCTGCAAGGAAACATGTGATTGTTAAGAGGGGCATTAAGCATGCAGAGAGGATAATGGATTTCTCCAAAGCAAGCATTTCTCTCATGATGTGCGTTAGTGGAGATGGAAAACTACTTCCTCCATATATCCTATATAAGGCTGAGCATTTATGGGACACCTGGCAGGAAGGACGGCCACCGAATGCAAGATACAACAGAAACAAGAGTGGGTGGTTTGATCTtccaatttttgaagattggtttTTATCAGTGGCATTGCCTTATTTCAAAAAGCTAAGCGGAAGGAAAATCATGATTGGCGATAATTTGTCAAGCCATGTATCACTGTTAGTGATTGAGCAATGTGAGAAGTACAACATCTCATTCATTCTTCTTCCCCCGAATAGCACGCACATCCTACAGCCCCTAGACGTGTGTTTTTTCGGGCCCTTTAAAAAGGCTTGGAGAGACGTGCTGACAAACTGGAAAATGTGCACACGTGGCCCTATCTCTAGAGATGCCTTCCCTGCACTTCTCAGAGATAGAAGCACGGAAAGTAGACAACATAAGAAGTGGTTTCTGTGCCACGGAACCACACGCCGCCGTCGCAAGCTGAATGTTCCTCCAGGAAAATCTATTGTGGGTGGTCATTTTGCTGGAAACGAAATTAGTGAGGAAAACCAGCAAGATTGTCACGAGAATTCAGAAGATCAGAATACTCCCATGCCAGCAGAGGATTCCACACCAGCATCGGCACCTActcttgacatcgaaactttcgtTGTCGTGAGGTACGACTACGTGTCTGGAAACAGATCACATCCTAGAGAGTATGTTGGCGTGGTAACTGATATAGGAGCACGAGACGTGGTTGTGAAATTTTTGCGACCCCATGATGGAAGCAAGAGGATGTTCACATTCCCAGATGTAGATGACGAAGACACAGTAACGAAAGACCAGATCAGTAAAATACTTCCAGCACCCAAggagaaaagaggcatttttgtttttgataaggactctctataa
- Protein Sequence
- MPRVYKRRLGSQMYCNYEEKKLDEAVKAIKSGKMSYRKAQEYFQIPRSTLENKVNRTNPKAIGTPSVLDNEEEKMLVHGILRASHWGYPLTSTDIRCIVKGYLDRMGRKEKRFTDNLPGVEWIRSFLKRHSNVLSVRLSENIKRARAEVTLKSVRGFFDNVRDTLEGTPPENIINYDETNFCDDPARKHVIVKRGIKHAERIMDFSKASISLMMCVSGDGKLLPPYILYKAEHLWDTWQEGRPPNARYNRNKSGWFDLPIFEDWFLSVALPYFKKLSGRKIMIGDNLSSHVSLLVIEQCEKYNISFILLPPNSTHILQPLDVCFFGPFKKAWRDVLTNWKMCTRGPISRDAFPALLRDRSTESRQHKKWFLCHGTTRRRRKLNVPPGKSIVGGHFAGNEISEENQQDCHENSEDQNTPMPAEDSTPASAPTLDIETFVVVRYDYVSGNRSHPREYVGVVTDIGARDVVVKFLRPHDGSKRMFTFPDVDDEDTVTKDQISKILPAPKEKRGIFVFDKDSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01410718; iTF_01410716;
- 90% Identity
- -
- 80% Identity
- -