Tsin001897.1
Basic Information
- Insect
- Tenodera sinensis
- Gene Symbol
- -
- Assembly
- GCA_030765045.1
- Location
- CM060961.1:62759522-62760316[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.5e-17 1.4e-13 52.5 0.0 2 45 119 163 118 163 0.95 2 2 0.79 1.3e+03 1.4 0.0 26 42 159 176 159 178 0.79
Sequence Information
- Coding Sequence
- ATGGAGCATGGTTATCCACGTTTGGCACTGTCATCATGCCAAGCTAGTCTCTCTGTTCAAGCCTCATCAGCCTTCTGTGCACCTGAGTCTCCCTCAGCACCTTCGGGAATGCGACGGGACATCCCTCAGTATGCTGGTCACTCTTACCAAAGTCACCAAATGCTTCCAGTGTCATCATGTGCTGTCATGGGCACATATGGTGCTCCACTCCAAGCACCATCAAGCCCTTGTTCAACTTCCTGCCCCAGTCCATGTAATAGCCCTTGTAATACTTCCTTCTTTGGTACAGCTGTCTCTGCCACTATGGGTCAAAACTCACCAGTGCGTCGGAAACGTAGCATCAACCCACAAGCAGATGAAAACTTCTTGCGGGCACTGGAAGCAGTTAGGTTTGGGGGCATTGGTTTCTGTAAAGCAGCACGAATGTATGGAGTGAACAACCGCACTCTTTGGCTTGAGTATAAGAAGAGGGGCTATCCAGTAAACCGACCCAGTCTGAAGGCCCGTGTGAAACAGGAACCACCAACACTTACCACTTCCGCAATgcctccacctcctccaccaagACATCTCCAGTCAAATGTAATAACAACACCAATCATGTGTCCTCCTCCACCACCCACCTCAATGATTGGGGGATTTCTGGACAGCCGTCATGAGTTTGCTGCACATCCTCAGGAAACATCAGCACCCCCTCCTCAGCCTCAACAACATAGATCTCAGGATGACAGGGAACCTTTGAATGAACAATCTCTTAATCCACACGGAATAAACAATACTTACAGCCAGATGTAA
- Protein Sequence
- MEHGYPRLALSSCQASLSVQASSAFCAPESPSAPSGMRRDIPQYAGHSYQSHQMLPVSSCAVMGTYGAPLQAPSSPCSTSCPSPCNSPCNTSFFGTAVSATMGQNSPVRRKRSINPQADENFLRALEAVRFGGIGFCKAARMYGVNNRTLWLEYKKRGYPVNRPSLKARVKQEPPTLTTSAMPPPPPPRHLQSNVITTPIMCPPPPPTSMIGGFLDSRHEFAAHPQETSAPPPQPQQHRSQDDREPLNEQSLNPHGINNTYSQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00955493;
- 90% Identity
- iTF_00955493; iTF_00434733; iTF_00820856;
- 80% Identity
- -