Tmol013872.1
Basic Information
- Insect
- Tenebrio molitor
- Gene Symbol
- -
- Assembly
- GCA_963966145.1
- Location
- OZ014542.1:7200489-7202547[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.029 7.9e+02 0.9 0.1 23 45 160 182 156 189 0.82 2 9 0.0022 62 4.4 0.2 26 54 276 304 269 304 0.89 3 9 0.0041 1.1e+02 3.6 0.1 22 53 300 331 295 332 0.84 4 9 0.0012 34 5.3 0.0 23 47 329 353 325 359 0.85 5 9 0.0039 1.1e+02 3.7 0.0 21 48 355 381 351 384 0.87 6 9 0.0019 54 4.6 0.1 23 47 413 437 406 444 0.82 7 9 0.028 7.6e+02 0.9 0.1 21 43 439 461 432 466 0.84 8 9 0.00033 9.1 7.1 0.0 21 49 467 495 459 498 0.85 9 9 0.00026 7.3 7.4 0.1 21 43 495 517 491 522 0.90
Sequence Information
- Coding Sequence
- ATGGGTGAAGAAATTTCAACAAACCTTTGTCGGGCGTGCTTGACCGAGTTCGGCGAGTTTCAGTCGATATTCGTTCCCGACGAAGCGACAGGGTTATCGATACATATTTCAGAAATGATAATGGCATTCGCTTCTGTACAGgcaacatttggAGACGGTTTACCAGAACAGATTTGTTCTACATGCGCCAAAGACACAGTCAAAATGTACATGTTCAAGCTAAAATGTGAGGAATctgataaaattttacgaaaccGTCTGGGCAAAAGTCCCCTACAAGAACAATTTGTAATTGAAGAGAAACACTACGTCGAAAATAAGGACGACGTAGACGTGTACAACATAGTCATTAAGCCAGAATTAAACTCAGAAGATTCTCAAATTAATCAGGATGTGTGTGatgattttgacaattttaattcACAAGAGAAAAGTGATAGTGACATTGAtgctgaattttttgatgatGATAGAGAAAAAGAGTTCAAATGTCCACATTGTTCCAAATTATTTAACAGGCAAACTGCATTAAACCGTCATGTTAAAACTCATTCAGTTATCAAAGCATTTCAGTGTGATACTTGTGATAAGAGGTTTACTcgaaatgatttattattaaggcACAAGATAGCTCATGCCATGAAAATGGATGACCCCAAGTTTGATTATGAAGATTTTGATGATGACATCGATCAAGAAGATGACACAATTATAATCAAGACAGAGGCAGCTTTGTATCCTTGTACAGAATgtaacataatatttattaagaaGGAAGAGTTAGATGTGCACATGCAAGATCATTTGAAAAGTATGGGAGGCAtagtttgtaaaatttgtctGAAAAAATTCAGTAAACAAGCACATCTCAACAGGCATTTGAAAATTCATTCCCAAAATAAACCTCATGTGTGTCCCACCTGCAAAAAGGGATTTGTTCGAGCTGAACAATTAAACAATCACATGAACATACACTCAGGGATCAAACCTCACGTTTGTGCTATTTGTCTCAAAGGCTTTAACCAAATATCAAACCTCAAGGATCATATGCGCACGCACAACGGAGAAAAGCCTTTCCTGTGTTCCACCTGCGGGAAAGGCTTCAATCAGTTGGGCAATCTTCGACAACATACTATTAGGCACAGCGGTATCAAAGCTCACCTTTGCAGTACGTGTGGCAACGGTTTCGCCAGCAAGGGAGAACTTTCAGCTCATCTGCGAAAGCACACAGGTGCCCGACCGTTCGTGTGTCCCATATGCAATCACGGTTTCACGACTTCAAGTTCGTTAACGAAGCACAAGCGGATTCATTCAGGAGAAAAACCGTACGAGTGTGACGTATGTaagatgaaattttcaagGTCGGGAATTTTGGCGAGGCATAAAAGGACACATACGGGAGAAAAACCGTACGTTTGCAAGTTCTGTACAAAGGCGTTTTCACAGTCAAACGATTTGACGTCGCATTTACGTATCCACACTGGAGAGAAACCATACATTTGTGATGTGTGTGGGCAAGCCTTTAGACAGAGTTCAGCGCTGAAGACACACAAGAAGACTCACATTGATAGAAACAATATTATTGAAACGAGGAACGTTATGGGCGTCATGCATGCTCCTTTCTAG
- Protein Sequence
- MGEEISTNLCRACLTEFGEFQSIFVPDEATGLSIHISEMIMAFASVQATFGDGLPEQICSTCAKDTVKMYMFKLKCEESDKILRNRLGKSPLQEQFVIEEKHYVENKDDVDVYNIVIKPELNSEDSQINQDVCDDFDNFNSQEKSDSDIDAEFFDDDREKEFKCPHCSKLFNRQTALNRHVKTHSVIKAFQCDTCDKRFTRNDLLLRHKIAHAMKMDDPKFDYEDFDDDIDQEDDTIIIKTEAALYPCTECNIIFIKKEELDVHMQDHLKSMGGIVCKICLKKFSKQAHLNRHLKIHSQNKPHVCPTCKKGFVRAEQLNNHMNIHSGIKPHVCAICLKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTIRHSGIKAHLCSTCGNGFASKGELSAHLRKHTGARPFVCPICNHGFTTSSSLTKHKRIHSGEKPYECDVCKMKFSRSGILARHKRTHTGEKPYVCKFCTKAFSQSNDLTSHLRIHTGEKPYICDVCGQAFRQSSALKTHKKTHIDRNNIIETRNVMGVMHAPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01410169;
- 90% Identity
- iTF_01410169;
- 80% Identity
- iTF_01410169;