Tmol010083.1
Basic Information
- Insect
- Tenebrio molitor
- Gene Symbol
- -
- Assembly
- GCA_963966145.1
- Location
- OZ014541.1:1180674-1182857[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.28 24 6.2 3.5 1 23 139 162 139 162 0.90 2 17 0.96 82 4.6 4.1 1 23 171 194 171 194 0.98 3 17 0.02 1.7 9.9 4.5 2 23 237 258 236 258 0.97 4 17 0.00028 0.024 15.7 3.3 1 23 267 290 267 290 0.97 5 17 0.00044 0.038 15.0 4.1 1 23 299 321 299 322 0.95 6 17 0.34 29 6.0 4.2 2 23 337 359 336 359 0.95 7 17 0.02 1.7 9.8 5.4 2 23 369 391 368 391 0.97 8 17 0.00086 0.074 14.1 3.9 1 23 400 423 400 423 0.96 9 17 0.00039 0.033 15.2 2.8 1 23 432 454 432 455 0.95 10 17 0.18 15 6.9 3.9 2 23 470 492 469 492 0.94 11 17 2.6e-05 0.0022 18.9 1.5 2 23 502 524 501 524 0.96 12 17 0.00059 0.05 14.7 3.1 1 23 533 556 533 556 0.94 13 17 0.11 9.8 7.5 1.8 1 23 565 588 565 588 0.94 14 17 0.086 7.3 7.9 2.3 2 23 603 625 602 625 0.94 15 17 0.082 7 7.9 3.7 1 23 634 656 634 656 0.97 16 17 0.036 3.1 9.0 5.5 1 23 665 688 665 688 0.95 17 17 5.2e-05 0.0045 18.0 6.3 1 23 697 720 697 720 0.97
Sequence Information
- Coding Sequence
- ATGGCAAATTTTGAACATACAGGGAGCATCCTGAAATGTGAGTGCGGAGGGATTCACGACTGCGATAGATGTTCTTACATGAGCAGCTCACTTTTTTTTCACCAGTTTCCATCATTCAGTTGCGAAACAAACTCTCTAGAAAGGTACAACTGTAAAAAGTGCGATTTTGGAAGCGATCTTAGGATTATTTTCAATCAACACATCCGAGAACATCACAGAAAGAGGATCGACGAACCGAAAAATGGCCTTGCAGTAAAAAGCTACATATGTCGAGAGTGCTCGTTCGAAACATATTCAGCGTTAATGTGGATCAAACACTCGAATACTTTGTGTTTAAAGACGAAAGAAGATTTCGAAAAAGTAACGTTTGGTAAAGATGCAAAATTGCATCTCTCCACAAAAGACATTCAATGGTTCAGGTGCGACAAATGCAACTATAAAACAAATCGAAGATACATTTTAAAACGTCACGACCGGATGAAACACACATTAAATGAAGAAACATCGTGGTATCGATGTGAACAGTGCgcttacaaaacaaaactgaaatgCTATCTTAAAGGTCACATAACAACTCGACACAAAGCCGATGAAGAAGAGATCCAATGGTTCAGGTGTGACAAGTGTGACTTCAGAGCAAAATACAGATGCAGAATGAAGACACACAAAGTGAACAAACACACATCTGACGAAGAAGTGTTGTGGCTGCAGTGCGAACAGTGCtcttacaaaacaaaactgaaatgCTCTCTTAGACGTCACATGAATCTGCACAAACCTGATGAAGAAGGAATGTGGTTTTACTGCTTCAATTGCGAGTTCAGGACTCGGAGGAAAGAAAACTTGAAACGTCACATGTTGGTGAAACACACCACACCCGAAGCTCTGCAATGGTTTGCTTGTGACGAGTGTCACTACCAGTCCAAAACCAAAGATGACTTGAAAAAACACGTAAAAGTGCACCATTCGGACGTAGTGGTGAAGATCAAAAAGAATGCAAGATGGTTGGAGTGCGACAAATGCGATTACAAAGTAACACAAAGGTTCAGAATGAAGCATCACAAACTGACCAAACACACATCAGACGAAGAAGTGTTGTGGCTGCAGTGCGAACACTGTTCGTACAAAACAAAAGCGAAACGCTGTCTTAAACGTCACATAATGACTGTGCACAAATCCGACGAAGAAGCACACTGGTTTTACTGTTTCAATTGTGAGCACAGGACTCGGAGGAAAGAAAACTTGACACGTCACATATTGGTGAGACACACCACACCCGAAGCTCTGCAATGGTTTGCTTGTGAGAAGTGTCAGTATAAGTCCAAAACCAAAGGTGACTTGACCAAACACGTAAAAGTGCACCATTCGGACGTAGCGGTGAAGATCAAAAAGGAGATAGAATGGTTAAAGTGCGACAAATGcgatttcgaagtaaaacaaAGGTACAAAATGAAGCATCACAAACTGATCAAACACACACCAGAAGAAGAAGTGTTGTGGCTGCGGTGCGAACAGTGCccttacaaaacaaaacagaaaTACTCTCTTAAACGTCACATAATGACTCTGCACAAATTCGACGAAGAAGCAAAGTGGCATTTCTGCTTGAATTGTGGGTACAGGACTCAGAGGAAAGAAAACTTGACACGTCACATGTTGGTGAAACACACCACAGCCGAAGCTGTGCAGTGGTTTGCTTGTGACAAGTGTCAGTACAAGTCCAAAATCAAATACGACTTGTACAAACACGCAAAACTGTACCATTCGGACGTAGCTGTGAAGATCAAAAAGAAGATAGAATGGTGGAAGTGCGACAAATGCGACTTCAAGGCAAGGCAAAGGTGGCGATTGAGGAGACACGAGCGGTTCAAGCACACGCCGAACGAAGAGGCTGTGTGGTTTCAATGTGAGCAGTGCTCCTACAAAACAATACGGAAAGGCAACTTGAAATGTCACGTGAAGTTGCACAAACCCGACGAAGAAACGGAATGGTTCTACTGCTTCAACTGCGAGCACAGGACGAAGAGTAAAAACAATCTGAAATATCACATGTTGCTCAAACACACTGCCCCGGAAGCCGTGCAATGGTTCACTTGTGACAAGTGCCAGAGCAAATTTAAGACGAAATCTCACCTGAACAGGCACCAAAAAAACTTGCATTCTTCCAAAGAAGTTCAAGTGTGA
- Protein Sequence
- MANFEHTGSILKCECGGIHDCDRCSYMSSSLFFHQFPSFSCETNSLERYNCKKCDFGSDLRIIFNQHIREHHRKRIDEPKNGLAVKSYICRECSFETYSALMWIKHSNTLCLKTKEDFEKVTFGKDAKLHLSTKDIQWFRCDKCNYKTNRRYILKRHDRMKHTLNEETSWYRCEQCAYKTKLKCYLKGHITTRHKADEEEIQWFRCDKCDFRAKYRCRMKTHKVNKHTSDEEVLWLQCEQCSYKTKLKCSLRRHMNLHKPDEEGMWFYCFNCEFRTRRKENLKRHMLVKHTTPEALQWFACDECHYQSKTKDDLKKHVKVHHSDVVVKIKKNARWLECDKCDYKVTQRFRMKHHKLTKHTSDEEVLWLQCEHCSYKTKAKRCLKRHIMTVHKSDEEAHWFYCFNCEHRTRRKENLTRHILVRHTTPEALQWFACEKCQYKSKTKGDLTKHVKVHHSDVAVKIKKEIEWLKCDKCDFEVKQRYKMKHHKLIKHTPEEEVLWLRCEQCPYKTKQKYSLKRHIMTLHKFDEEAKWHFCLNCGYRTQRKENLTRHMLVKHTTAEAVQWFACDKCQYKSKIKYDLYKHAKLYHSDVAVKIKKKIEWWKCDKCDFKARQRWRLRRHERFKHTPNEEAVWFQCEQCSYKTIRKGNLKCHVKLHKPDEETEWFYCFNCEHRTKSKNNLKYHMLLKHTAPEAVQWFTCDKCQSKFKTKSHLNRHQKNLHSSKEVQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01410307;
- 90% Identity
- -
- 80% Identity
- -