Tmol009481.1
Basic Information
- Insect
- Tenebrio molitor
- Gene Symbol
- prdm10
- Assembly
- GCA_963966145.1
- Location
- OZ014540.1:28172043-28175880[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00037 0.032 15.3 0.2 2 23 430 451 429 451 0.96 2 13 4 3.4e+02 2.6 0.1 2 14 482 494 481 506 0.80 3 13 0.05 4.3 8.6 0.1 1 23 524 546 524 546 0.92 4 13 1.3e-05 0.0011 19.8 0.5 1 23 557 579 557 579 0.97 5 13 9.7e-06 0.00083 20.3 1.7 1 23 592 614 592 614 0.98 6 13 1.1e-05 0.00095 20.1 0.7 2 23 623 644 622 644 0.97 7 13 0.021 1.8 9.8 0.7 1 20 651 670 651 673 0.91 8 13 0.074 6.3 8.1 2.2 1 23 679 702 679 702 0.96 9 13 0.00027 0.023 15.7 3.0 1 23 707 729 707 729 0.97 10 13 0.0014 0.12 13.5 4.0 1 23 735 758 735 758 0.89 11 13 0.0029 0.25 12.5 1.7 1 23 794 817 794 817 0.97 12 13 0.00037 0.032 15.3 4.1 1 23 839 862 839 862 0.97 13 13 0.0019 0.17 13.0 3.8 3 23 902 923 900 923 0.96
Sequence Information
- Coding Sequence
- ATGGACGCAATCGTGCAAGGGCCCCCAGAGGACGGGGCCCAAGACCTGAATCTAGTCGACACAACTGGATGGACAACCCAAAATTCCCAAgaaattgtaaataataattccACTTTTTTGTACATCGCCGTTGAATATGTGAAAGATGAGTACAAAATGGAGCCAAGTGTTAGTCTGGCGCAGCCCCCAGacaattttagtgattttgaaCAACACGTGAGCCCCCTCGACCCGAACATGAGCTCGGTGGCGCGGTACAGCCCCGTTTACAGCGAGCCCTCAACTGAGTACAACCCAGTTGTGATCCACCAACTTGTACAACAAGACTCTGGACAGAATGACATAATCAACAATCTCACCCCAAACTCGCCCCTAGAGGCGATGCCGGTGTTGTGCAATAACGACATCAGGGAAGTGGTGGACAACCACTTTCTGCAAATGGTCAACTCTACAGGTGCTGCCCCCGCTACCGCGCAACCTGAACTGCAAGTGGTGCCCCCTAGCGACCAAGAAGTCGCGTTGTTGATCACCGATCAAGAAACGGGAATCTCGTATAGCGTCAGGCCCCAAGAGTTCCTGGTGGAGCGCTGTTTGGAAGATGAACAATTGTTGAACGCGCTCAGTCCTGACCCGCTCCTAGACTCGCATCTTCTGGCCCTGGACGAGAACACCCTCAAGACGGAGTTGAGCGACGACATCATCAACTCGACGGTCAATTCCACCGTCAACAATTACATTTCGAGCTTGGCGACGAGCGTCGAGCAAGAGAGTCAACTGAGGATGGAAACGCGGCGGCAGAAACAAACCGAAGTTGAATTGCCCAAAGTCTACAGTATCGTCGACAAACCGGTGCTGTCAAGGGCTAGAGCTACTTTGCCAGAGTCCTATCTGGTCTTAAATAAGGTGGACGAAGGACTGGGCGTTTTTGCGAAGAAAACGATCCCGAAGAGGACCCAGTTTGGTCCTTTGACCGGAATCGTGAAGCCTGTGAGTCCCGAAGAATTGAAAAACAGTCCTCCAGGACTACAATTCCTGATCGAAGACGAGAATCACGTCGTCAGTCAGTTGGACGTTTCCGACGAAAATTCCTCGAACTGGATGCGCTTCATCAGACAAGCGACGacttataacgaacaaaatcTTTTGATCACCCAAGAAGACAACTCCCTCTACTTCACcacaatgaaaaatattctCCCCAAGCAGGAGTTGAAGGTGGGTTACGGGTGGCCCTACGCCATCCGCCACGAACTGTCGGTGCTGGTGCCGGAGGAGGAGAAATCGTGGTCGTGTTTCGAGTGTTCGGAGAAGTTTGCGACGTCGAACGAGCTCCAAGAGCACCTGAACGTGCACGACGTCGTCAAAGACGAAAACACGAAACCTCGGAAGAAGAGTTTGAAGAACAAGAGGAAAGCGGTGGCGAAAACCGGAAGCGAGGCCTTGCAGTGCAACAACTGCAACGAGTTGTTCGTCCAACCGGGGAAGGTCGCGTTGAGGCAGCACCTCATCGAGAAGCACCTCCTCAGCGGCTTGGACCTGATCGATCAGTATTTCTCTTCAGTCATGAACTACAAGTGCGAGGCCTGCGAGGCTGTTTTCAACTCGGAGGCTCTTCTCAAGATTCACAATTATCTGCACGATTCTGACAGCTCGGACGAACAGACCAATCACGTTTGTCCCAACTGTCAAAAGAAATTCCCGACGCAGCGCCAACTGGTGGCGCACGTGGCAACTCACGCGTTGACAAAAGTCGAAGCGCCCCAACCCGAAACATTCAAGTGTCCAGTGTGTCACAAAATGTTCGCTTTGCGCGAGCGATTGAGGCGCCACATGCTGGTGCACGGCTCGGAAGACTCGAAGCCTCTGCAATGCAAGACTTGCAACAAGCGTTTTATCAACAATTCGGCTCTGGCCGGCCACTTGAAGACCCACTTCGTCGGCAAGAAGGTGTTCGAGTGTCCCATCTGCAAGGAGAGCTTCGACCACGTGCTCAAGCTAAAGCTGCACGTGCCCAAACACTGCGAGAACAACATGTACTCGTGCCCCCATTGCATCAAGGTGTTCAAGAAGTACAGCATCATCCGGAAGCACATCAGGGCGTTCCACTGCGACCAGAAGCACTCGTGTCCGCACTGCGTGAAGATGTTCCCGACTCTGGACAAGCTGAAGATGCACCTGTTGCGCCACTCCGACCACAGAGAGTTCCTGTGCGCCGACTGCGGCAAGCAGTTCAAGCGCAAGGACAAGCTGAAGGAGCACTGCAAGCGGATGCACTCGGAGGAGCGCGAGAACGACGTGCCCCGCCCCCAGAAGCCCGCCTCGCAGCCACCGAAGAAGCTGAGTCCCAAGATGGAGCCCACCGACTTCCACCGCTTCATCTACAAGTGCCACACGTGTCTGGTGGGCTTCAAGAGGCGCGGCATGCTGGTCAATCACCTCGCCAAGAGGCATCCGGATATCAGCCCCGACTCGGTCCCGGAGCTCAACCTCCCGATCCTGCAGACCACGAGGGACTACTACTGTCAGCACTGCGACAAGGTCTACAAGAGCAGCTCGAAGCGGAAGGTCCACATCTTGAAGAACCACCCGGGGGCGGCGCTGCCCATGAGCAACAGGCGGCAAGGGAACTTCGCCGACGGCTCTGGTCTCCCCAACCCCACCTTCTCGCAGACGGTGGGGAGCATCACGACGAGGCCCCAGAACTGCAAGTGGTGCCACAAGCAGTACGCCAGCAAGGCCAAGCTGCTGCAGCACCAGAGGAAGAAACACAGCGAACAGATGGCGCAACAGAGCGAAAACGAGGGGAAGGGCGGGGAGGTGGCGGAACAGAAGTACACGCCGCCGCACGTGAGCCAACCAGTCGAAGATCCTCTACAGGAGGATTTCAAGGTGACGGAAGCGGACATCTTGAACAGCGCTTTGGAGGAATACAACGGCAGCCGGGACGGCGAACAGTACTGTCACTTGATCGCGATAGCCAACGGCGACGGTTTCGAACAAACTGCAGATCTCAACGCTCCCAATTCTCATCTGTATCGCTTGCTGACCACGAGCAACGAACTCCCAGGTCTCGTGCCGCCACGTTGA
- Protein Sequence
- MDAIVQGPPEDGAQDLNLVDTTGWTTQNSQEIVNNNSTFLYIAVEYVKDEYKMEPSVSLAQPPDNFSDFEQHVSPLDPNMSSVARYSPVYSEPSTEYNPVVIHQLVQQDSGQNDIINNLTPNSPLEAMPVLCNNDIREVVDNHFLQMVNSTGAAPATAQPELQVVPPSDQEVALLITDQETGISYSVRPQEFLVERCLEDEQLLNALSPDPLLDSHLLALDENTLKTELSDDIINSTVNSTVNNYISSLATSVEQESQLRMETRRQKQTEVELPKVYSIVDKPVLSRARATLPESYLVLNKVDEGLGVFAKKTIPKRTQFGPLTGIVKPVSPEELKNSPPGLQFLIEDENHVVSQLDVSDENSSNWMRFIRQATTYNEQNLLITQEDNSLYFTTMKNILPKQELKVGYGWPYAIRHELSVLVPEEEKSWSCFECSEKFATSNELQEHLNVHDVVKDENTKPRKKSLKNKRKAVAKTGSEALQCNNCNELFVQPGKVALRQHLIEKHLLSGLDLIDQYFSSVMNYKCEACEAVFNSEALLKIHNYLHDSDSSDEQTNHVCPNCQKKFPTQRQLVAHVATHALTKVEAPQPETFKCPVCHKMFALRERLRRHMLVHGSEDSKPLQCKTCNKRFINNSALAGHLKTHFVGKKVFECPICKESFDHVLKLKLHVPKHCENNMYSCPHCIKVFKKYSIIRKHIRAFHCDQKHSCPHCVKMFPTLDKLKMHLLRHSDHREFLCADCGKQFKRKDKLKEHCKRMHSEERENDVPRPQKPASQPPKKLSPKMEPTDFHRFIYKCHTCLVGFKRRGMLVNHLAKRHPDISPDSVPELNLPILQTTRDYYCQHCDKVYKSSSKRKVHILKNHPGAALPMSNRRQGNFADGSGLPNPTFSQTVGSITTRPQNCKWCHKQYASKAKLLQHQRKKHSEQMAQQSENEGKGGEVAEQKYTPPHVSQPVEDPLQEDFKVTEADILNSALEEYNGSRDGEQYCHLIAIANGDGFEQTADLNAPNSHLYRLLTTSNELPGLVPPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01480343;
- 90% Identity
- -
- 80% Identity
- -