Tmol014468.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tenebrio molitor
Gene Symbol
-
Assembly
GCA_963966145.1
Location
OZ014542.1:12998236-13001791[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.4e-05 0.0012 19.8 1.8 1 23 137 159 137 159 0.99
2 16 0.00012 0.0099 16.9 8.1 2 23 166 187 166 187 0.97
3 16 0.00084 0.071 14.2 1.6 3 23 196 216 194 216 0.95
4 16 0.0012 0.1 13.7 1.5 1 23 282 304 282 304 0.99
5 16 3.6e-06 0.00031 21.6 6.0 2 23 311 332 311 332 0.98
6 16 0.00011 0.0094 17.0 4.5 2 23 349 371 348 371 0.97
7 16 6.9e-05 0.0059 17.6 2.6 1 23 438 460 438 460 0.96
8 16 0.00029 0.025 15.6 1.1 1 23 466 489 466 489 0.93
9 16 1.8e-06 0.00015 22.6 0.8 1 23 494 516 494 516 0.98
10 16 1.7e-07 1.5e-05 25.8 1.5 2 23 527 548 526 548 0.97
11 16 2.2e-08 1.9e-06 28.6 0.8 1 23 555 577 555 577 0.98
12 16 2.6e-05 0.0023 18.9 1.6 3 23 589 609 587 609 0.92
13 16 0.00024 0.02 15.9 5.1 1 23 615 637 615 637 0.99
14 16 3e-05 0.0026 18.7 3.1 1 23 643 665 643 665 0.98
15 16 6.6e-08 5.7e-06 27.1 0.2 1 23 671 693 671 693 0.99
16 16 0.00028 0.024 15.7 0.2 1 23 699 723 699 723 0.92

Sequence Information

Coding Sequence
ATGATTAATAAATCGACGGAGTTGGTTATAGACAAGATCTGCCGTTCATGTATGTGCCAAGATGAGAACATGCGAAATCTCTTTGATTCAAAAGAACTCGGCGGCCAAACTTTGCAACTCGCCGAAATATTAATGGACTGTGCCTCCGTAGTGGTTATCTCAGGGGACGGCCTTCCAAACCTGCTGTGCGTGAACTGCGAGAACAAGCTCAACTTGGCGTACGAATTCAAGCAGCAGTGCCAGAAATCGGACTCCGCGTTGCGGGAACTGACCAACCCCAGCGACTCGGTGATCAAGGAGGAGTCCTGCGACATCGTCGTCCAGCCAGACTTCAACATTCCAGACCTATTCCAAGACTCCGACAGCGACGACGACGACACCTCCGACAAGCGGAAGTCGTCGTCGTCGTTCACGTGTCCCTTCTGTCAGAAGGTGCTGAGGACGAAGAAGGGCCTGCGCATCCACCAAAGACGCCACACGGGCGACAAGCTTCGGTCATGTCACATGTGCAACGCCCAGTTCACCAGGAGTCACCACTTGATCAGGCACATGAAGACGCACGTGAAAACGGACGCGGGACATCTGTGCGCCGAATGCGGCATGTCCTTCATGAAGCTGAGCAATCTGCTGTCACACAAGAAGATGCACAAGTCGGACTCGGGGGAGAAGAGCGACGACGGCGAGAACGGGCAACAGTCGACTGCCGCCGATAACAACAGCGATTGCGACAACGAAATCACTCTGGAGATAAATGaagacgacgacgacgacgaggaCGAGGAAGACGCCCTCGACGAATATTTCAAGCCCAAAACGAAATCCTCCAAAAAGGACAAAGGGACATACGAGTGTAAATATTGCTTTAAGATTATGACGACGTTCGTGGGGCTGAAGATTCACATGAGGCGGCATACAGGCTCAGACCTGGCCAAGTGTAAATTGTGTGAAAAGAGTTTTACGAAAAGCAGTCACTTGAAACGTCATTTGCAAACACACGGTATTAAAGAATTAGAGAAGCCAAAGCCAGTCGAAAAGAAAGTGATGGAATGCGAATTTTGtgatcgaaaatttaaatataagaAAAGCTTTAATCATCACATGCAGACCGAGCATGGGATGTCGGATGAAAGCGACGTACCCTTGAGCGCTTACATCTCAAAAATTAGCAATAAAGACACCGAAAGTACTAAAGAAGAATTAGTAGAAGAAGAAACTACCACCAACGAGAAGAATCCGGAACCCGAACAGCCGGCGTCGGATCAGGAAATGAAGAACAGTCCTCCCGCCCCCAAGCCTGCGCACCACAAAGTACACGTGTGTCACGTGTGCGAGGCGGCTTTTGCCAGAGCCAATCACCTGACGCGTCACATGACTCTGCACAGAGCCCTCCTGATACACAAATGTGATAGGTGCGATAAAGCTTACGCAACTTTGGAACActtggcgaaacacgtggagGAAGACCACATAAATAAACCCTACGCTTGTACCATCTGCAACAAGCCCTTCAGCAGAGGAGAACATCTGATCAGACACCTGAAAGTACACCAGAGCGGCAACGAAAAAGAAGATAATCTGACTTGCTCCATATGCGAAAAGACGTTCAGCAGGTCGGATCATCTGGCTCGACACATCAAAATACATTTGCTCCAAGACAAACGACATGTCTGTCCCGAGTGTGGCAAAGCGTTTAATCGACTCGATAATCTGAAAACTCATCAGAGAATTCACACTGGTATCAAAGATACAACAAAGTTGCATTTGTGCATTTATTGCGGCAAGGAGTTTAATAATTCGAGCAATATGATCGTTCACATGAGACGCCACACTGGAGAGCGTCCGTACAAATGTAGTCAGTGCGGAAAAGGCTTTCCCAGGTCGCACGATCTCAAATGTCACGAAAGGACACACTCGGGGGAAAAACCGTATCATTGTGCGCTGTGCGGAAAGTCGTTCAACAAAAGCAATAAATTGTTGCGGCACACTCGGGTCCACACCGGGGAGCGGCCGTACGTGTGCAACATCTGCGGCCGCGCCTTCACCCAGTCCAACGACTTGGCCTTGCACATGCGCCGCCACACGGGGGCCCGGCCCTACGCCTGCGGCATGTGTCCCGCCCGCTTCATCCAGTCCGGCCAGCTGAAAACCCACCGTCGCTCGACGGGCCACTGGGTGGAGACGCAGCCGGATCTGAAAGGGGGCCACCGAGTGGAACCCGTGACTCCCGTGGTCGAGCCGACGCCGATCCGATTCAAGACGCACGGCAAGCCGAAGAAAGACGACGAGCTGGACGAGTCGAAGAACGCCAAGCTCCTGGCCCACACGATGGGTCTGATGGGACCCCTGAACATGCAAGGGGAGAATCTGGTGATCGATTCGAAAATCGCGGAGTTGCAAAACTCGGGATTGATCAATCTGGTGGGGGGCGGAGGCGAGATCAAGTTCAAGACGGACGGTGGAGGGTTCGTGATGTCGCCCGTAAAGACCGAAGTGAGCGGGAAGGGACAGGAGGAGGGGGTGTCTGTGGCGCAGGCGGCGTTCCAGCAGGCGGTCTCGCCGGTTACTTATTCGATAGTGGCGCCGGTCCCGACCTCGACAACTTTCACGACGGCGGATTACAGCAATTATCAGAGTTTCGGTTGA
Protein Sequence
MINKSTELVIDKICRSCMCQDENMRNLFDSKELGGQTLQLAEILMDCASVVVISGDGLPNLLCVNCENKLNLAYEFKQQCQKSDSALRELTNPSDSVIKEESCDIVVQPDFNIPDLFQDSDSDDDDTSDKRKSSSSFTCPFCQKVLRTKKGLRIHQRRHTGDKLRSCHMCNAQFTRSHHLIRHMKTHVKTDAGHLCAECGMSFMKLSNLLSHKKMHKSDSGEKSDDGENGQQSTAADNNSDCDNEITLEINEDDDDDEDEEDALDEYFKPKTKSSKKDKGTYECKYCFKIMTTFVGLKIHMRRHTGSDLAKCKLCEKSFTKSSHLKRHLQTHGIKELEKPKPVEKKVMECEFCDRKFKYKKSFNHHMQTEHGMSDESDVPLSAYISKISNKDTESTKEELVEEETTTNEKNPEPEQPASDQEMKNSPPAPKPAHHKVHVCHVCEAAFARANHLTRHMTLHRALLIHKCDRCDKAYATLEHLAKHVEEDHINKPYACTICNKPFSRGEHLIRHLKVHQSGNEKEDNLTCSICEKTFSRSDHLARHIKIHLLQDKRHVCPECGKAFNRLDNLKTHQRIHTGIKDTTKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCSQCGKGFPRSHDLKCHERTHSGEKPYHCALCGKSFNKSNKLLRHTRVHTGERPYVCNICGRAFTQSNDLALHMRRHTGARPYACGMCPARFIQSGQLKTHRRSTGHWVETQPDLKGGHRVEPVTPVVEPTPIRFKTHGKPKKDDELDESKNAKLLAHTMGLMGPLNMQGENLVIDSKIAELQNSGLINLVGGGGEIKFKTDGGGFVMSPVKTEVSGKGQEEGVSVAQAAFQQAVSPVTYSIVAPVPTSTTFTTADYSNYQSFG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01568241;
90% Identity
-
80% Identity
-