Trug021615.1
Basic Information
- Insect
- Temnothorax rugatulus
- Gene Symbol
- PRDM10
- Assembly
- GCA_035220575.1
- Location
- JASTWL010000404.1:550252-554673[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0021 0.35 12.8 0.1 2 23 524 545 523 545 0.95 2 11 0.0016 0.26 13.2 0.1 3 23 562 582 561 582 0.96 3 11 0.021 3.4 9.7 3.3 1 19 599 617 599 621 0.93 4 11 0.00044 0.073 14.9 0.3 2 23 630 651 629 651 0.97 5 11 0.00036 0.059 15.2 0.6 1 23 658 680 658 680 0.98 6 11 0.0016 0.27 13.1 4.2 1 23 687 709 687 710 0.95 7 11 0.0028 0.47 12.4 4.6 1 23 715 737 715 737 0.98 8 11 4e-05 0.0067 18.2 5.9 1 23 743 766 743 767 0.95 9 11 0.002 0.34 12.8 1.7 1 23 799 822 799 822 0.97 10 11 4.5e-05 0.0075 18.0 2.4 1 23 844 867 844 867 0.97 11 11 0.0046 0.76 11.7 3.4 3 23 905 926 905 926 0.98
Sequence Information
- Coding Sequence
- ATGGATCCAAGGGGCCCTCCTGAGGGGGCCCCTGCCGAGTCCTTCGAGATATCCAGCATCGACAGGGGGGCTGACACCTCGGTGAATTGGCCTACGGATCACCCCTTCGCCTCGTCCCTGTGCGAGCAACCGAAGAAGCTGAACAACAGGCTCCTGTTCCTGACCGTGGAATATGTGGAGGATCAGTCCCGATTGTTCCCCACGTATGAACAGATCTCCTTTTCCCCGAGGGCGGCCTCTCCTCTGTCCGAATTCGAGCATCGAGTCAGCCCGCTGGACCCAAATATGAGCTCCGCTGCTAGATACTCCCCCACGCCGGTCCAACTGCCTTCCTCTCCTTTCCACAACTCCGTTGTCGTGCTCCAAGGCCCGTCCTCGCCTTTGATGTCCCAGCCCGAACCGAATATACGAACGAGCATCAATTACGTGACTCAGCTGGCTCACCCGATTGACACTCAGACCGTACCTCAGACGGATACCACCACGGACTTTGTTGGCAATGGGAACGAGGATGGACTAGTGTCCAGTGTCAGCAACGAATTGATTTTAATGCAGGAAACTGCACCTGAATTGGAATCTTCAGCGACTCCCTTAATGCTAGCAGGAATACCGGGCACAGATTTCGCTCTGACTAGGGACTTCTTGGTGATGCAGGATGATCAAATAAACGTTATCAACACGTTTAAAAATCAGAATATAGAGATGGAGGACAACCCTATTACTTTACCATCTATTGCCGAAGACGCGAATAAAGAAAACAACAATCTTGCTTTGTCAGAGTGTGATAAAGAAATTCGACAAATTGCCAAAGAACCACCGTCCACCGAGAAGAAAAAAGTAGTTGAGAAAAAAGATGTAAGGAGATCCAAACGGCATATAACAGATAAAAAAGATTTCTGGGGCGACGACGAATACGACGGTAATTGTGCCAAAGACGACAGCTCTAATTTGACCGATGTATGCGCAATCGCGGATCAACCTGTGCCATCGCGTGCTGTAGCAACACTGCCAGGATCATATCTTTTGTTAAACAAGCTATCTACTTCGCACGCTGCAGCGAATAGCGTGACCTATGGGGTTTTTGCGAAACGTAATATTCGAAGGCGCACGCAATTCGGACCCATAGAAGGTCTATTGTGCCCTTACAACGGCTCACCTTTCGAGAATGCTTTGCCACTGCTCTATGAAACTGAGACCGGGGAATTCCTGAAAGTGGACGTTTCCAATGAAAACACTTCGAACTGGATGCGTTTTGTACGGCCCGCGCTGACGTATAAGGAGCAAAACTTGATCATTTGTCAGCAGAAAGATGGAATAGTGTTTTTGACTAATAGAAACATTTCGCCAAAGGAAGAATTAAAGGCAGGTCCTAGTCCAGACTATGCAAGTCGCAGAAATTTGCCAATACTTAAACCAGATGCAAAAGATGAAAAAGcgGAAGTGGCTAACCAAATATCTACATGGCCACGTTTGGATGGCAACTCTTATAATCGACGCATAAAAATGTTTCGCGACAGAAACGTGAAAGAAAAGGAGAATTCGCGACATAACAAATGCGACAAGGAATGGAAATGTTCCGTGTGCAGCTTGATTTTCAGAAAGCCATCCCTGCTTAACTTGCACGCAGCCGTTCATTCTTCTATCGATATCAAAATTGAAAATCAAAGTCAAGTCCAGTCCGCATGCCCGCAGTGTGGATTGGAGTTCCAGAAGCAAAGCGAATTGGTGAATCATGTGTCTCAGCACGGGCGAACGGCGTTACCTAAAGCAAAGAGATTAAATCCTTTAGGTTCATACAAGTGTTCAATGTGTTACAAACGTTTCGCTACAAAGATACGATTACAACAGCACTGCTTGGCGCACGGTGCTGAAGACCAAAAACCACTGCCATGCAGTATCTGCTTGAAACGATTTATGAACAACTCCGCGTTGTCCGGTCATCTGAAAACGCATAAAGAAAATAAACAGGTCTTCGAGTGCCCAATGTGCAGGCAGCTATTTCGCCAAAGTACGATGCTGAAGGATCACGTTGAGACACATAGAAATCAAGACGGTATATTCAATTGCCCTCACTGCCAGCGAACATTCATTAAATATTCGGTCATTCGCAAACACATTCGGGCACATCACTGCGAGAGGAAGCACAAGTGTCAGCATTGTGCAAAACGTTTCCCGACGGTCGACAAGTTGCGAATGCATTTGCTGAAACACTCTGATCACAGAGAATTTCATTGCGCGAACTGTGGTAAACGGTTCAAGAGAAAGGACAAATTGAAGGAACACATGACCAAAATACACCACTCCCAAACGGTTAATGGAGAACAAATAACACAGAACAATCAAGCGAAAAAATTTGTGCCAAAGgtGAACCCGAACGATTACAATCGCTTTATTTACAAATGTCATCAATGCCTGGTGGGTTTCAAACGAAGAGGAATGCTGGTGAATCACCTAGCGAAGCGGCATCCCGATGTCGCCCCCGAATCTGTGCCGGAACTGAACTTACCTATCCTGCGACAAACCAGAGACTACTATTGCCAATATTGCGACAAGGTCTATAAGAGTAGCAGTAAGCGTAAAGCGCATATTATGAAGAACCATCCTGGCGCGGCCTTGCCGCCTAGCAACCGGCAAAAGGAGTCGGAATTTTCAGGACTGCCGAATCCAAGCTTCAGTCAGACAGTGGGCAGCATCACGACTAGTCCTCAAGGTTGTCAGTGGTGCCATAAACAATACGCCAGCaaggcCAAGCTCTTGCAACATCAACGCAAGAAGCACGCACACCTGATGGAGCCGGCGGATCAAATACCGCGATCGCGGAACCGGCCGCCGCAAAATCAAAATCAACCACCCGCGCTGAACGATAACAACTTTGTGATATCCGATTATATACAAGGATGCGACGGGGATTTCCTGAAgcagaaaataatcaaaataactAACGACGTTGATCTGATAGGCAACGGAGGTTTGGAGACGATCGGTCAGCAGTTTGTGCGTATGCGCGACATACGTTGA
- Protein Sequence
- MDPRGPPEGAPAESFEISSIDRGADTSVNWPTDHPFASSLCEQPKKLNNRLLFLTVEYVEDQSRLFPTYEQISFSPRAASPLSEFEHRVSPLDPNMSSAARYSPTPVQLPSSPFHNSVVVLQGPSSPLMSQPEPNIRTSINYVTQLAHPIDTQTVPQTDTTTDFVGNGNEDGLVSSVSNELILMQETAPELESSATPLMLAGIPGTDFALTRDFLVMQDDQINVINTFKNQNIEMEDNPITLPSIAEDANKENNNLALSECDKEIRQIAKEPPSTEKKKVVEKKDVRRSKRHITDKKDFWGDDEYDGNCAKDDSSNLTDVCAIADQPVPSRAVATLPGSYLLLNKLSTSHAAANSVTYGVFAKRNIRRRTQFGPIEGLLCPYNGSPFENALPLLYETETGEFLKVDVSNENTSNWMRFVRPALTYKEQNLIICQQKDGIVFLTNRNISPKEELKAGPSPDYASRRNLPILKPDAKDEKAEVANQISTWPRLDGNSYNRRIKMFRDRNVKEKENSRHNKCDKEWKCSVCSLIFRKPSLLNLHAAVHSSIDIKIENQSQVQSACPQCGLEFQKQSELVNHVSQHGRTALPKAKRLNPLGSYKCSMCYKRFATKIRLQQHCLAHGAEDQKPLPCSICLKRFMNNSALSGHLKTHKENKQVFECPMCRQLFRQSTMLKDHVETHRNQDGIFNCPHCQRTFIKYSVIRKHIRAHHCERKHKCQHCAKRFPTVDKLRMHLLKHSDHREFHCANCGKRFKRKDKLKEHMTKIHHSQTVNGEQITQNNQAKKFVPKVNPNDYNRFIYKCHQCLVGFKRRGMLVNHLAKRHPDVAPESVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIMKNHPGAALPPSNRQKESEFSGLPNPSFSQTVGSITTSPQGCQWCHKQYASKAKLLQHQRKKHAHLMEPADQIPRSRNRPPQNQNQPPALNDNNFVISDYIQGCDGDFLKQKIIKITNDVDLIGNGGLETIGQQFVRMRDIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00885376;
- 90% Identity
- iTF_01523591;
- 80% Identity
- -