Trug011178.1
Basic Information
- Insect
- Temnothorax rugatulus
- Gene Symbol
- pita
- Assembly
- GCA_035220575.1
- Location
- JASTWL010000127.1:396404-399811[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.9e-05 0.0064 18.2 0.4 2 23 311 332 310 332 0.97 2 11 5.6e-05 0.0093 17.7 1.2 1 23 339 362 339 362 0.98 3 11 0.001 0.17 13.8 2.3 1 23 404 426 404 426 0.98 4 11 7.7e-07 0.00013 23.6 1.5 2 23 480 501 479 501 0.97 5 11 3.6e-05 0.0059 18.3 1.3 1 23 506 529 506 529 0.95 6 11 0.00014 0.023 16.5 0.2 1 23 567 589 567 589 0.97 7 11 1.3e-06 0.00022 22.8 1.7 1 23 599 621 599 621 0.96 8 11 6.4e-06 0.0011 20.7 1.8 1 23 627 649 627 649 0.99 9 11 1.5e-05 0.0025 19.5 0.2 1 23 655 677 655 677 0.98 10 11 6.2e-05 0.01 17.6 4.5 1 23 683 705 683 705 0.98 11 11 0.0017 0.29 13.0 0.5 1 21 711 731 711 732 0.94
Sequence Information
- Coding Sequence
- ATGGCAGTCCCGAGCGATGACGCGATGGTGAATAGCACGGCACGCGCGGAACGGCTCGTCGGCAACGAGTGCCGTATCTGCCTCAAGCCCTGCACGGAGGTGTGCGAGCTCTTTCGCGACGATGGCGGGATACCGGAGAAACTGATGGCCATCGCCGCCGTGCAGGTGGAGGAGGGGGACGGTCTGCCAGCTTACATCTGTTTGTCCTGCAATCATCTGCTCGACGTGTCCTACGACTTCAGATGCCAGATTCAGAACTCCGATATCAGACTACGTCAGATCCTGAAGTCGCAGGTTCAACCTATGTTGCACGAGAAACATATGAAAGACATGAAGACCATGATGATGAAAGATATCACGGACGCCGTATCCGACGTAATGTCTTACAAGAAAGATAATCATGTCATGGAGCAGGACATTTACTCGCCTCACGATATCGTTACGTTTGACAGTACTGCCGTTCAGTCCGATTCGGTGATTAACGATGAATCTCACATAAGTCACAAGTTCATGCAGAAGACGGAGGAAATTATAGAACCGAGTGAAAAAGATTCATCTTATGATACATTTAAAGAGAACGTAGACAGTGCTGAAATGATGGAAATAGCTTTGTGTCACGAGGCGAACGTGGACGATGCGGCTGCCGATCACTCGGATCGATTGTCCAGTTCGACGACGGAAGACAGATGCATCAAGCAGGAGCAGTTGCTGCTACCCGAAGACAACGAGACGTCGGGGAGTTTAACGGACGAGAATCGGgaagattcattaaagattGAAGTTAAGAATGACGTATTATTGGAGGACTTCAACGACCACGAAGTTTCGCAGGAGATCACGGTATTGAGAACGGACAATCAGGATATGAAGGGCGTCGCTAACTGCAGCGACGACGAGGAGAAGCCACTCATAAGCAGGACAACCAGGCAGAAGTGCGCGTATTGCATCAAGTCGTTCGCGACGAAGGTAGCGTTGCAGCGACACATGAACGTGCACAAGCACACGAAGCTGCGTTACGTGTGCGTCGTGTGCGACAAGCAGTTCTCCAACATCGACAAATTGAAGGGCCACATGCTCACGTGTCACGAGAGTCAGATGATGGACGGTAAAGCGTCGCAGGATGACAAGAGGACGGGCAAAGTGTCGGCGAAAGTTACCAGAAGCGGCAACCTGACGGACAGCGCGAGGGAGGAGAAGAAAAACTTCAAGTTCACGTGTAAAGTCTGCTCGAAGCAATTCATATATCAGAAGTCCTTTGTGTCTCACGCCAAAAGCCATGCCGAATACAATATGGACGTGGACGACGTGCTCGATCAGTTCACGAGTAAGACGACGGACGAGCAGAAGGATAGAATGCCGACGTTCAAGGAAAACGAAtccgaggaggaagaggaagaggaggacgacgacgacagtGACTTGCCGATCGAAAGTCTACAGTGTACTCAGTGCGGCAAGCTTTTCGCTACGAAGAGGAACCTGAAGAGGCACATCTCGACGCACAGCGGCTTGAAGTTCAATTGTTCGACATGCGGCAAAGGATTTTCGAGGCTTGACAAGCTGAAGGATCACGAACAGTCGAAGCACAAAGAGGAAATATTCGGCAATACTGACGACGAGGACGATGACGAGGAGGATAACGAGAGCAAAATCAACGACAATTCCGAGAACCGAAAGAAGGACCGACACAACAGGCCACACAAGTGCGCGCTCTGTCCAAAGGCGTTCGCGCAGGCTCAATCCCTGGCAAACCACGTAGAGAGGCATAAACGGGTGAAGGATACGCAAAAGCGGTTTCTCTGCGAAAAGTGTAGCAAGTGCTTTGCTCAGAGTGGCTCGCTGGTGGCGCATATGCGCACACACACCGGCATCAAGCCGTACGTGTGCAACACGTGCAGTCGCGCCTTTACCAAGAGCACGTACCTACAGCTGCACCTGAGAACTCACAGCGGTGAGAAACCGTATATCTGTCAGTACTGCAGCAGGGCGTTCGCTCGGGCCAACACTCTGGCGCGGCACATCACCATGCACACCGGTGAGGCCAAATACCATTGCAACATCTGCACCAAGTCCTTCCGGCGACTGACCTCGCTGAACGAGCACACGTATACGCACACCGGTCAACGACCGTACGCGTGCAAACTCTGCACGAAGAGGTACAACAACGCCGGCTCATTATATGCTCACACGAAGAAGTGCAAGGCGCAGCAATTGTCCAGCTCGACCACGACCACATTCGCGGTGTCCACGGCGGACAATGCGCCGCAGCAGAACGACACGACCATGCCCCAACTGCTGATTTATTCCCAGAGGAAGCTGGTGGAAGAGGCGACTATCGGTCAAGTCGTATCCACGCCGCAATACATGGTAACAAATGTGCATAATCAAAAAACTGTGCCCGCGACGGTGCCCGCCAACGTGATTCAGCCCTTCACCGTAGAGGACCCAAATGTATATAATTCAAAGCAGTTTAAGAACTCGTATTACGCTATTTATCcaaataacatataa
- Protein Sequence
- MAVPSDDAMVNSTARAERLVGNECRICLKPCTEVCELFRDDGGIPEKLMAIAAVQVEEGDGLPAYICLSCNHLLDVSYDFRCQIQNSDIRLRQILKSQVQPMLHEKHMKDMKTMMMKDITDAVSDVMSYKKDNHVMEQDIYSPHDIVTFDSTAVQSDSVINDESHISHKFMQKTEEIIEPSEKDSSYDTFKENVDSAEMMEIALCHEANVDDAAADHSDRLSSSTTEDRCIKQEQLLLPEDNETSGSLTDENREDSLKIEVKNDVLLEDFNDHEVSQEITVLRTDNQDMKGVANCSDDEEKPLISRTTRQKCAYCIKSFATKVALQRHMNVHKHTKLRYVCVVCDKQFSNIDKLKGHMLTCHESQMMDGKASQDDKRTGKVSAKVTRSGNLTDSAREEKKNFKFTCKVCSKQFIYQKSFVSHAKSHAEYNMDVDDVLDQFTSKTTDEQKDRMPTFKENESEEEEEEEDDDDSDLPIESLQCTQCGKLFATKRNLKRHISTHSGLKFNCSTCGKGFSRLDKLKDHEQSKHKEEIFGNTDDEDDDEEDNESKINDNSENRKKDRHNRPHKCALCPKAFAQAQSLANHVERHKRVKDTQKRFLCEKCSKCFAQSGSLVAHMRTHTGIKPYVCNTCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCNICTKSFRRLTSLNEHTYTHTGQRPYACKLCTKRYNNAGSLYAHTKKCKAQQLSSSTTTTFAVSTADNAPQQNDTTMPQLLIYSQRKLVEEATIGQVVSTPQYMVTNVHNQKTVPATVPANVIQPFTVEDPNVYNSKQFKNSYYAIYPNNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01476429;
- 90% Identity
- iTF_01406734;
- 80% Identity
- -