Trug043650.1
Basic Information
- Insect
- Temnothorax rugatulus
- Gene Symbol
- -
- Assembly
- GCA_035220575.1
- Location
- JASTWL010002078.1:1502230-1507606[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.22 37 6.4 1.4 1 23 302 324 302 324 0.91 2 13 0.0054 0.89 11.5 2.0 1 23 329 353 329 353 0.91 3 13 0.00017 0.028 16.2 0.7 1 23 393 416 393 416 0.98 4 13 1.2e-07 2e-05 26.1 2.5 1 23 421 443 421 443 0.98 5 13 0.0061 1 11.3 0.1 1 23 450 473 450 473 0.89 6 13 1.6e-06 0.00026 22.6 4.6 1 23 479 501 479 501 0.98 7 13 1.2e-05 0.002 19.8 2.3 1 23 507 529 507 529 0.97 8 13 0.00029 0.048 15.5 3.7 1 23 535 557 535 557 0.98 9 13 2.6e-09 4.3e-07 31.4 0.7 1 23 563 585 563 585 0.99 10 13 7e-06 0.0012 20.6 3.3 1 23 591 613 591 613 0.98 11 13 3.7 6.1e+02 2.6 5.7 2 23 620 641 619 641 0.95 12 13 4.1e-06 0.00067 21.3 0.7 1 23 647 669 647 669 0.98 13 13 1.4e-06 0.00024 22.7 2.2 1 23 675 697 675 697 0.98
Sequence Information
- Coding Sequence
- ATGGTAGACGTGCATCTGTACGACTCGACAATTTGTCGATTGTGCGCGGCGAGCAACGGCAACGAGCATCTGTTCGTCAGCGAGACGGGCGAGCCGGATCTCTCCTCGCTCGTGAATCGTTACCTGCCACTCAAGATTTATGACGATGGAAAACTACCACGGACAATTTGCCCGGGTTGTAACATCCAACTGGAGGCGACGGCGCAATTCTTTGAGTTGTTGGTGGCTGGCCAGCGCAAGATACGTGAACTCTGGAAACATCAAGTGGAAAAGCAGCGCAAGGCAGAACGCTTGCGCGGCAGAAAGGAAAATGTGGAGTTTGAAGCGGAAGGAACAGAAATGGATAGTACGGCTCAGTATAATGAAGATGAGCAGCACGAACagcaaataattattaagaTTATGCCAGATGGATCTATGTATGCGGTGGAGCATGAAATGAGTTTGCAGATGGAAGGCTTGACTAAGCCAAAAAGGAAGCGTGGACGTCCTCCTAAAGTAAATACGGAGGAAGATTCTGtggcgACAAAAGAGAATCCTGCAGAAGCTGTGAGTCAAGGTGAAGAGGATAAgcaggaagaggaagaagaagtgGATGGTGATGGTAGACGCAGAAGAAAGCGCAAAGTTCCCAAAAGGTATCTAGAAGCAGTGCAGGGAAAAGAATTGGAAAGGATATTCAAGGAGGAAGGTGTGATCGATGAGGAAGACAATGATAATTCTCAAATGCTTGACGGACCGTCAACCAGCAGTGGATCAGCAAATCTGTTAAAATCTTCTAGTCAGGATGGTCAAGAAGAAGTGATAGGACATCTCGAAACAGAAGAGGGTACAGACTTGGGTGAGGTGGTGACTGTAAACCGTGGACGATCAAAATCAAAATTGCGCCGTCGAAAAAATAAGTTCACGTGCCAACTCTGCGGCAGGGGTTTCCTACAACGTAGCAGATATATAGTACACAAGAGTTTCCATATGGGTATCAAGCATGAATGCGCACAATGCAAGAAGCTATTTGAAAGTAAAGAGAGTCTGACATTGCATCAAGAAACGACTAAACACAATTCAAATCCCACCGAAGAAAATGTCAAGGTACAGAAGTCGCATGAGATGCACAACGCAGAGCCGAGCACCTCCACAGCGACACCCGAGATAGCGAAAGATTCCAAAAAAGCGATTTATACGTGCGAAAAATGCAACAAGCAGTTTGGATTGAAACAAGAATACGAATTGCATATGAGAGTGGTGCATGAGCAGCAGAAATTCACTTGTAACACTTGTAACAAGAGTTTCATAAATCAATCGGATTTGAAGACGCACATGACAACGCACGGGAAAACTAAATCGGACTACGCTTGCGATATCTGCGGTAAGGTCCTAAACCATCCGAGTTCCGTCTTGTATCACAAGGAAGCCGAGCATAATAACGGTCGTCGTTTCGTCTGCAACAAATGCAACAAAAGCTTCAAGCATAAACAGTTGCTCCAGCGACATCAGCTGGTGCACTCGGATAATCGGCCGCACGTTTGTAGCTTCTGTAACGCCAGTTTCAAGACGAAAGCAAATCTGATTAATCATCAGTCCACCCACACCGgtcagaaaaaatataaatgtgaaCTTTGCAAGCAACAATTTGCGCATAAGACTAGTCTCACTTTGCATTACAGATGGCACAGTGGTCAAAAGCCATTCAAATGCAAGGAGTGCGGCAAGAGCTTCTCGCAGAATGGCAATTTGCAAGAGCATATACGCATTCACACTGGTGAAAAGCCATACAGTTGCGATTTTTGCGGCCGGAAGTTCACCACGTCGTCACAGTTTAAACTACATGTAAAACGGCATACCGGTGAGCGGCCGTGGAAATGCGAGTTTTGCGAGAAGAGCTTCTTGCACAAAGATACATGGAAATGTCACGTGCGCCGGCATAAGGGGGAACGTCCGTTTCAATGCAGTGAATGCAAACGTGGCTTTACGGAACAGTGGGCGCTGAAGAAACATATTCGTTTGCACACTGGTGAGAAGCCTTATTCCTGCGATGTGTGTAACAAAGCTTTCGCCGATTGTTCAAACTTGACAAAGCACAAAAAGGTGCACAGGGAGAATAAGACGCCAACTACAAACAAATCGGAAGGATCTCCGATCGGCGAAGTGTGGCAGATTCTGCCGAATTCACGGGAGGTTGACGAACGGACGTTCAGTAATCAAATAATAACCACTGACGAAACATCTAATGACGGGATTCAACAGATTATTTATGTATCTTATCAGGATCCTAGCGATTCTAATGACCGAACATTCCATATGATTGGCGCCAACAAGGACAAAGACGAAATAGTGACGAGTGTGAATTCCTTGTCGCGTTTGGATATGGAGAACGATGAAATCATTGCCGATAGAATTATGAGTAATGCAGCCAGTAGCAATGACGACCAGTCAGAGATCGAATTGACGGAACCAGATTTGCAGTTGCAGATCACAGATGAACATGGAAATCCGATTCCGTTAACCATTCAGGAGGCTCGACAGCTTTTGTCGCAGGGTCATTTTGTCAGCCAGTTTAACGACAACCAAATTATCAGAGTTCATCCTGGAATGTTCGCGACACAACAACTCCAAGCTTTGAATATTCATGTCGACGAAGACACTATGGAGGAAACTGGAATCATAGTGCGTCCGAATACACACAAGAATATCGAGGCGTTGTCGGCAATTCAAGCTGACGCGGAAGCAATTGTTCAAGCGCTTGAGGACGAGGATACCGACGCCACGGCAGTCGCGACCATCAATCAGCTAGGGAATATCGAGCAGGCTGAATTCATGAATGGTGAACAAACAATTGAATTCGTGACTCAGGATGGACAGAAACTTCGTGTCCTAACATCGCAGCTCGCTTCAGAGTACGTGACTATTgcgtaa
- Protein Sequence
- MVDVHLYDSTICRLCAASNGNEHLFVSETGEPDLSSLVNRYLPLKIYDDGKLPRTICPGCNIQLEATAQFFELLVAGQRKIRELWKHQVEKQRKAERLRGRKENVEFEAEGTEMDSTAQYNEDEQHEQQIIIKIMPDGSMYAVEHEMSLQMEGLTKPKRKRGRPPKVNTEEDSVATKENPAEAVSQGEEDKQEEEEEVDGDGRRRRKRKVPKRYLEAVQGKELERIFKEEGVIDEEDNDNSQMLDGPSTSSGSANLLKSSSQDGQEEVIGHLETEEGTDLGEVVTVNRGRSKSKLRRRKNKFTCQLCGRGFLQRSRYIVHKSFHMGIKHECAQCKKLFESKESLTLHQETTKHNSNPTEENVKVQKSHEMHNAEPSTSTATPEIAKDSKKAIYTCEKCNKQFGLKQEYELHMRVVHEQQKFTCNTCNKSFINQSDLKTHMTTHGKTKSDYACDICGKVLNHPSSVLYHKEAEHNNGRRFVCNKCNKSFKHKQLLQRHQLVHSDNRPHVCSFCNASFKTKANLINHQSTHTGQKKYKCELCKQQFAHKTSLTLHYRWHSGQKPFKCKECGKSFSQNGNLQEHIRIHTGEKPYSCDFCGRKFTTSSQFKLHVKRHTGERPWKCEFCEKSFLHKDTWKCHVRRHKGERPFQCSECKRGFTEQWALKKHIRLHTGEKPYSCDVCNKAFADCSNLTKHKKVHRENKTPTTNKSEGSPIGEVWQILPNSREVDERTFSNQIITTDETSNDGIQQIIYVSYQDPSDSNDRTFHMIGANKDKDEIVTSVNSLSRLDMENDEIIADRIMSNAASSNDDQSEIELTEPDLQLQITDEHGNPIPLTIQEARQLLSQGHFVSQFNDNQIIRVHPGMFATQQLQALNIHVDEDTMEETGIIVRPNTHKNIEALSAIQADAEAIVQALEDEDTDATAVATINQLGNIEQAEFMNGEQTIEFVTQDGQKLRVLTSQLASEYVTIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01409389;
- 90% Identity
- iTF_01406731;
- 80% Identity
- -