Basic Information

Insect: Temnothorax longispinosus
Gene Symbol: -
Assembly: GCA_004794745.1
Location: QBLH01003436.1:702227-710116[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.038 3 8.0 1.6 1 23 296 318 296 318 0.94

2 13 0.0015 0.12 12.5 2.9 1 23 323 347 323 347 0.91

3 13 8.7e-05 0.0068 16.4 1.0 1 23 390 413 390 413 0.98

4 13 1.9e-07 1.5e-05 24.7 3.2 1 23 418 440 418 440 0.98

5 13 0.002 0.15 12.1 0.1 1 23 447 470 447 470 0.89

6 13 9e-07 7e-05 22.6 4.6 1 23 476 498 476 498 0.98

7 13 1e-05 0.0008 19.3 2.3 1 23 504 526 504 526 0.97

8 13 0.00046 0.036 14.1 3.1 1 23 532 554 532 554 0.98

9 13 1.5e-09 1.2e-07 31.4 0.7 1 23 560 582 560 582 0.99

10 13 4e-06 0.00031 20.6 3.3 1 23 588 610 588 610 0.98

11 13 9.7 7.6e+02 0.5 5.4 2 23 617 638 616 638 0.95

12 13 1.8e-06 0.00014 21.6 1.6 1 23 644 666 644 666 0.98

13 13 8.2e-07 6.4e-05 22.7 2.2 1 23 672 694 672 694 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.038	3	8.0	1.6	1	23	296	318	296	318	0.94
2	13	0.0015	0.12	12.5	2.9	1	23	323	347	323	347	0.91
3	13	8.7e-05	0.0068	16.4	1.0	1	23	390	413	390	413	0.98
4	13	1.9e-07	1.5e-05	24.7	3.2	1	23	418	440	418	440	0.98
5	13	0.002	0.15	12.1	0.1	1	23	447	470	447	470	0.89
6	13	9e-07	7e-05	22.6	4.6	1	23	476	498	476	498	0.98
7	13	1e-05	0.0008	19.3	2.3	1	23	504	526	504	526	0.97
8	13	0.00046	0.036	14.1	3.1	1	23	532	554	532	554	0.98
9	13	1.5e-09	1.2e-07	31.4	0.7	1	23	560	582	560	582	0.99
10	13	4e-06	0.00031	20.6	3.3	1	23	588	610	588	610	0.98
11	13	9.7	7.6e+02	0.5	5.4	2	23	617	638	616	638	0.95
12	13	1.8e-06	0.00014	21.6	1.6	1	23	644	666	644	666	0.98
13	13	8.2e-07	6.4e-05	22.7	2.2	1	23	672	694	672	694	0.98

Sequence Information

Coding Sequence: ATGGTAGACGTGCATCTGTACGACTCGACAATTTGTCGACTGTGCGCGGCGAGCAACGGCAACGAGCATCTGTTCGTCAGCGAGACGGGCGAGCCGGATCTATCCTCGCTCGTGAATCGTTACCTGCCGCTCAAGATTCACGACGATGGAAAACTACCACGGACAATTTGCCCGGGTTGCAACATCCAGCTGGAGGCGACGGCGCAATTCTTCGAGCTGTTGGTGGCTGGCCAGCGCAAGATACGCGAACTCTGGAAACATCAAGTGGAGAAGCAGCGCAAGGCAGAACGCTTCCGCGGCAAAAAGGAAAATGCGGAGTTCGAAGCGGAAGGAACAGAAATGGATAGCACGGCTCAGTATAATGAAGATGAGCAGTACGAacagcaaataattattaagaTTATGCCAGATGGATCTATGTATGCGGTGGAGCATGAAATGAGTTTGCAGATGGAAGGCTTGACTAAGCCGAAAAGAAAGCGTGGACGTCCTCCTAAAGTAAATGCGGAGGAAGATTCTGTggcgACAAAAGAGAATCCTGCAGAAGCTGGGAGTCAAGGTGAAGAGGATAAgcaggaagaggaagaagaagtgGATGGCGATGGTAGACGCAGGAGGAAGCGCAAAGTTCCCAAAAGGTACCTAGAAGCAGTGCAGGGAAAAGAATTGGAAAGGATATTCAAGGAGGAAGGTGTGATCGATGAGGAAGACAataattctcaaatatttgACGGTCCAGCAGATCTGTTAAAATCTTCTAATCAGGAGGATGGTCAAGAAGAAGTGATAGGACATCTCGAAACGGAAGAGGGTACAGACTTGGGTGAGGTGGTGACTGTAAACCGTGGACGATCGAAATCAAAATGGCGCCGTCGAAAAAATAAGTTCACGTGCCAACTCTGCGGCAGGGGTTTCCTACAACGTAGCAAATATATAGTAcacaaGAGTTTCCATATGGGTATCAAGCATGAATGCACACAATGCAAGAAGCTATTTGAAAGTAAAGAGAGTCTGACATTGCATCAAGAAACGACTAAACACAATTCAAATCCCACCGAAGAAAATGTCGAGGTACAGAAGTCACAGAAGTCGCATGAGACGCACAACGTAGAGCAGACCACCTCCACGGTGACACCCGAGATAGCGAAAGATTCCAGAAAAGCGATTTATACGTGCGAAAAATGCAACAAGCAATTTGGATTAAAACAAGAATACGAATTGCATATGAGAATGGTGCATGAGCAGCAGAAATTCACTTGTAACACTTGTAAAAAGAGTTTCACAAATGAATCGGATTTGAAGACGCACATGACAACGCACGGGAAAACTAAATACAACTACCCTTGCGATATCTGCGGTAAGGTCCTAAACCATCCGAGTTCCGTCTTGTATCACAAGGAAGCCGAACATAACAACGGTCGTCGTTTCGTCTGCAACAAATGCAACAAAAGCTTCAAGCATAAACAGTTGCTCCAGCGACATCAGCTGGTGCACTCGGATAATCGGCCGCACGTTTGTAAATCCTGTAACGCCAGTTTCAAGACGAAAGCAAATCTGATTAATCATCAGTCCACCCACACCggtcagaaaaaatataactgtGAACTTTGCAAGCAACAATTTGCGCACAAGACTAGTCTCACTTTGCATTACAGATGGCACAGTGGTCAAAAGCCATTCAAATGCAAGGAGTGCGGCAAGAGCTTCTCGCAGAATGGCAATTTGCAAGAGCATATACGCATTCACACTGGTGAAAAGCCATACAGTTGCGATTTCTGCGGCCGAAAGTTCACCACGTCGTCACAGTTCAAGCTACATGTAAAACGGCATACCGGCGAGCGGCCGTGGAAATGCGAGTTTTGCGCGAAGACCTTCTTGCACAAAGATACATGGAAATGTCACGTGCGCCGGCATAAGGGGGAACGTCCGTTTCAATGCAGTACATGCAAACGTAGCTTTACGGAACAGTGGGCGCTGAAGAAACATATTCGTTTGCACACTGGTGAGAAGCCTTATTCCTGCGATGTGTGTAACAAAGCTTTCGCCGATTGTTCAAATTTGACAAAGCACAAAAAGGTGCACAGGGAGGATAAGATGCCACCTACAAACAAGTCGGAAGGATCTTCGATCGGCCAAGTGTGGCAGATTCTGCCGAATTCAGTTCGGCAGGTTGACGAACGGACGTTCAGTAATCAAATAATAGCCACTGACGAGACATCTAATGATGGGATTCAACagattatttatgtatcttaTCAGGACCCTAGCGATTCTAATGAGCGAACATTCCATATGATTGACGCCAACAAGAACAAAGACGAAATAGTGGCGAGTGTGAATTCCTTGTCGCGTTTGGATATGGAGAACAATGAAATCATTGGCGATAGAATTATGAGTAATGCAGCCAGCAGCAATGACGACCAGTCAGAGATCGAATTGACGGAACCAGATTTGCAGTTGCAGATCACAGATGAACACGGAAATCCGATTCCGTTAACCATTCAAGAAGCTCGACAGCTTTTGTCGCAGGGGCATTTTGTCAGCCAGTTTAACGACAACCAAATTATGAGACTTCATCCTGGAATGTTCGCGACACAACAACTCCAAGCCTTGAATATTCACGTCGACGAAGACACTATGGAGGAAACTGGAATCATAGTGCGTCCGAATACACACAAGAATATCGAAGCGTTGTCGGCAATTCAAGCTGACGCAGACGCAATTGTTCAAGCGCTTGAGGACGAGGATACCGACGCCACGGCAGTCGCGACCATCAATCAGCTAGGGAATATCGAGCAGACTGAATTCGTGAATGGTGAACAAACAATTGAATTCGTGACTCAGGATGGACAGAAACTTCGTGTCCTAACATCGCAGCTCGCTTCAGAGTACGTGACTATTGcgtaa
Protein Sequence: MVDVHLYDSTICRLCAASNGNEHLFVSETGEPDLSSLVNRYLPLKIHDDGKLPRTICPGCNIQLEATAQFFELLVAGQRKIRELWKHQVEKQRKAERFRGKKENAEFEAEGTEMDSTAQYNEDEQYEQQIIIKIMPDGSMYAVEHEMSLQMEGLTKPKRKRGRPPKVNAEEDSVATKENPAEAGSQGEEDKQEEEEEVDGDGRRRRKRKVPKRYLEAVQGKELERIFKEEGVIDEEDNNSQIFDGPADLLKSSNQEDGQEEVIGHLETEEGTDLGEVVTVNRGRSKSKWRRRKNKFTCQLCGRGFLQRSKYIVHKSFHMGIKHECTQCKKLFESKESLTLHQETTKHNSNPTEENVEVQKSQKSHETHNVEQTTSTVTPEIAKDSRKAIYTCEKCNKQFGLKQEYELHMRMVHEQQKFTCNTCKKSFTNESDLKTHMTTHGKTKYNYPCDICGKVLNHPSSVLYHKEAEHNNGRRFVCNKCNKSFKHKQLLQRHQLVHSDNRPHVCKSCNASFKTKANLINHQSTHTGQKKYNCELCKQQFAHKTSLTLHYRWHSGQKPFKCKECGKSFSQNGNLQEHIRIHTGEKPYSCDFCGRKFTTSSQFKLHVKRHTGERPWKCEFCAKTFLHKDTWKCHVRRHKGERPFQCSTCKRSFTEQWALKKHIRLHTGEKPYSCDVCNKAFADCSNLTKHKKVHREDKMPPTNKSEGSSIGQVWQILPNSVRQVDERTFSNQIIATDETSNDGIQQIIYVSYQDPSDSNERTFHMIDANKNKDEIVASVNSLSRLDMENNEIIGDRIMSNAASSNDDQSEIELTEPDLQLQITDEHGNPIPLTIQEARQLLSQGHFVSQFNDNQIMRLHPGMFATQQLQALNIHVDEDTMEETGIIVRPNTHKNIEALSAIQADADAIVQALEDEDTDATAVATINQLGNIEQTEFVNGEQTIEFVTQDGQKLRVLTSQLASEYVTIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01409389;
90% Identity: iTF_01405953; iTF_01408472; iTF_01409389; iTF_01407579;
80% Identity: -