Trug011848.1
Basic Information
- Insect
- Temnothorax rugatulus
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_035220575.1
- Location
- JASTWL010000142.1:416356-417417[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-32 2.2e-28 100.9 2.3 210 300 24 110 7 110 0.96 2 2 0.034 4.1e+02 1.4 0.2 23 41 118 136 113 148 0.77
Sequence Information
- Coding Sequence
- ATGAAGGGAGAGAGCATAACGAGTTACGATATGCATATGATCAAAGAGGGTACTAGTCAGTACAGAAGCTGCAGAATATTAGAGACGGCTGGTAAAGGTTCACtagATATTCGACTGAGAAAGTTTGCTTCGGAGAAAAAGGAATTGCAAGATGAAATTCGCCGTTTAAGATTGGAATTAGAAGAAACTAGGAGTCGCGCGAGACCCGAAAAATCATCTGGCTCAATATTAGGTTGTTTAACAGACAACGAAGATATTCAACGTGAAGCGAATAAATTATTGGccgattataaatttaaattacaaaaagcaGAACAAGATATGTCAACGTTGCAAGCGACAGTAGCTAGATTAGAAAGTCAAAAAAAGGAAGTTGCAAAGAGAAgtGAGAGAAACACAAAGCCGTGTAGAAGAATTAGAAACCAGCAAACTCTCATCTACAAAGGAGAGCTTTGA
- Protein Sequence
- MKGESITSYDMHMIKEGTSQYRSCRILETAGKGSLDIRLRKFASEKKELQDEIRRLRLELEETRSRARPEKSSGSILGCLTDNEDIQREANKLLADYKFKLQKAEQDMSTLQATVARLESQKKEVAKRSERNTKPCRRIRNQQTLIYKGEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -