Trug007828.1
Basic Information
- Insect
- Temnothorax rugatulus
- Gene Symbol
- tfip11
- Assembly
- GCA_035220575.1
- Location
- JASTWL010000070.1:665707-668850[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-77 2.5e-73 248.5 15.1 65 275 310 516 285 516 0.93 2 2 0.045 4.3e+02 1.7 0.0 244 270 537 563 527 568 0.81
Sequence Information
- Coding Sequence
- ATGGGCACCATGGCTCGTCCCCGACGCAAACTCTCGAAAAAACAGCAAACGCTAGGAATATGGGCAGATGACAGTGATGAAGATGAATTATCTGCCAGACCATCTTTCAAAACCTTCAACAAGGGTCCCAAAAATTATACGGTGCCGGTTAGTTTTGTCGCTGGTGGTATCCAACAGGTGGGAcaaccaaaagagaaagaagacaagGATGACGAAGAAGAGGACGAGATGCAGGAGACGAGGCACAGCAGCTCGAGttCAGAAGATGAGAAGTCAAATGGTCCCAAACGTCCATCCTTTGCCTTGACCTTGGACAGTGACATCGCAGGCCTGCGTAAAAAGCGCAATCAAGTTAATCCATTGCTGATGAAAAGCGGAATAGGCAGTTGGGAAGTGCATACAAAAGGCATTGGCGCTAAATTATTCCTGCAGTCGCCAAAGATTCCCGAGAAGAAGAAGGATGACGATGGGGAGGAAGCAAAAGAATCCAAGTCCAAGGTATCTCAATGGCGGAAGGGTGATAGCAGTAACAAGAAAAAAGTCAGATACGGCTATAGAAGTGTGGATCAAGTTTTGGAAGATGGAAAACTGAAGCCTAACAGAAAAGCTCCGGTGTCTAGCGATATGAGTAGAGTTAAAGTTATCGATATGACAGGGCCAGAACAAAGGATTCTTAGCGGATATCACGCGATAGCTGGTGGTCAACAGTGTCCTGACGAGACCGTAATTACGTCGGACAAGAAATCGAAAGTGAACTTTGCCCTGCCCGAATTgcaacataatttaaatttactcgTGGACACATGTGAGCGAGATGTTATCCAAAACGATCGGCGAATGAGCCATTTAAGTGATAGAATAGTTTCTTTAGAAGCCGAGAAAAAGAATTTATCCAAAATCGTGGATAAGTATAAAACCGCGGAGGCTATCAAAAATTTGCAAACCAACTATTACGAAGAGTACAAAATGTACGAACTCGATCAACTAGTATGGAATGCTTGGATGCCGTCGATCAGAGGAGCCATAGAGCAGTGGACATGTAGACAGCCCGAGCCTTTAATTGAGTTAATGGAATGCTGGATGCCGCTATTACCTAATTGGATCCTGGAAAATATACTAGATTTATTAGTGTTACCGAAATTGACACTGGAGGTGGAAGAATGGAATCCTCTTACCGATACTGTACCTATTCACACGTGGATTCATCCTTGGTTGCCGTTATTAcGAAATCGGTTAGATACGTTGATTTATCCAATAATACGTCGAAAACTCGGATCTGCATTAGGAGGTTGGCATCCGTCGGACAGATCCGCTAGATCAATGCTGCAACCCTGGGCAGAGGTGTTCGCCAAGAGAGACATGGAGGCGTTTTTAGTGAAGAATATTATTCCAAAATTGCAAATAACCTTATCCGAGTTTGTCATAAATCCACGTCAACAGGACTTGGATCAATGGAATTGGGTGTATGAGTGGAAGGAATTGATCCCTGTTCATATCATGGCAGGATTGCTCGATAAATTCTTTTTCCCAAAATGGCTAGAAGTCTTAAAACTTTGGCTCAAATATTATAATGATCATCCTAATTATGATCCTAATTATGATCAAGTTACAACATGGTACATGGGATGGAAAGGAATGTTGAGCGACAAGTTACTGGCGGAACCAGTAATAAAAGAGCACTTCGAGGAAGCATTGGACATGATGAATAGGACCGTCAGTGGGTCACAAAACCATCAACCTGGCGCACTGGAACGGGTTTCATATTTAATAAGTTTAGAGAGAACTCAGCCGACGATGTCTCAGATGGCACCGATTGCGCAACCGAGAATGGAGAGGCTCAGAACAGAAGCGGTACGAACGGCCTCGCAGATTCCGCAGGGTTTCAAAGATTTCGTACAAAAGAAATGCGAAGAGAGGGGGATACTATTAATACCGATCCCAAACAAATATCAAGACTCTAAGCAAGTCTACAAAGTAGGCAATGTTCAGGCCTACATCGACCGCAACGTATTGTTCGTACGTCATGATACAAATTGGATGCCAACGCATATAAATGCTTTGCTGGACATGTCTGTGCTTTAA
- Protein Sequence
- MGTMARPRRKLSKKQQTLGIWADDSDEDELSARPSFKTFNKGPKNYTVPVSFVAGGIQQVGQPKEKEDKDDEEEDEMQETRHSSSSSEDEKSNGPKRPSFALTLDSDIAGLRKKRNQVNPLLMKSGIGSWEVHTKGIGAKLFLQSPKIPEKKKDDDGEEAKESKSKVSQWRKGDSSNKKKVRYGYRSVDQVLEDGKLKPNRKAPVSSDMSRVKVIDMTGPEQRILSGYHAIAGGQQCPDETVITSDKKSKVNFALPELQHNLNLLVDTCERDVIQNDRRMSHLSDRIVSLEAEKKNLSKIVDKYKTAEAIKNLQTNYYEEYKMYELDQLVWNAWMPSIRGAIEQWTCRQPEPLIELMECWMPLLPNWILENILDLLVLPKLTLEVEEWNPLTDTVPIHTWIHPWLPLLRNRLDTLIYPIIRRKLGSALGGWHPSDRSARSMLQPWAEVFAKRDMEAFLVKNIIPKLQITLSEFVINPRQQDLDQWNWVYEWKELIPVHIMAGLLDKFFFPKWLEVLKLWLKYYNDHPNYDPNYDQVTTWYMGWKGMLSDKLLAEPVIKEHFEEALDMMNRTVSGSQNHQPGALERVSYLISLERTQPTMSQMAPIAQPRMERLRTEAVRTASQIPQGFKDFVQKKCEERGILLIPIPNKYQDSKQVYKVGNVQAYIDRNVLFVRHDTNWMPTHINALLDMSVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -