Trug014101.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Temnothorax rugatulus
Gene Symbol
rfx7.L
Assembly
GCA_035220575.1
Location
JASTWL010000187.1:245309-251840[+]

Transcription Factor Domain

TF Family
RFX
Domain
RFX domain
PFAM
PF02257
TF Group
Basic Domians group
Description
RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.6e-33 4.3e-29 102.3 0.1 3 78 199 274 197 275 0.97

Sequence Information

Coding Sequence
ATGAGTACTGACAGTCATGATCAGACGAAATCCTGCAAAACATCCGCGAGGAGCGACGAGGAGAGCGCGTTCGATGGTAAACGGATTAAGAAGGAGCGCAGTGACGTTTGCGTGGAGAATGGCGACGCCGCTACCGTTACCGCCGGCACCTCCACTTCCTCAGCCGCCGTCAccgtcaccgccgccgccaccgctgttgctgccgctgccgctgccgctacCTCTACCGCTACCGCTACCGCTACCGCTACCACGGTCCTCGAGAAACGACACTCGTCGGCCGGCAGATTTGCCTCCAACGGCTTCCACGGCGATGGCGATCAGCTGCAGGACCTCGTCGCGGCCAAATTCGCGACCTTGGCCAACCACGGCGCCTCCTCCAAGCAGGACAAGATTCGGATTATGATAGAGGATGGCATTAGcGAAGAGTCTAGAGCGCGTGTGGACGAGATCTTCTCGCAGGTGGAACGACTTAAGCTAGAGGAAAAGTTATTGTTGTACCTGAAACTTCCGTTGCTGCTGACAAACCCGAGTGGGACCGTCGATCCGTTAAGGCAGCCGCTAAATCCATTAGGAAATCGCTACGAAATTCATCAGACCATCATGTGGATTAAGACTCATTTAGAAGAAGACCCGGATGTATCTTTACCGAAGCAAGAAGTGTACGATGAATACAAcatgTATTGCACGAGAAATTCTATGAAGCCGTTATCGACGGCCGATTTTGGAAAAGTCATGAAACAAGTGTATCCACGAGTGCGCCCTCGTAGACTAGGCACACGGGGTAACTCTCGCTACTGTTACGCTGGTATGCGCAAGCGAATTAAATTGGATCCTCCAACACTGCCAAAGATATCTGGCTCTGACACTGAGGAACACTCGGAGGAAAATACCACTGAGGAAATGTTAGGCGCTGCATCTACATTGATAAGAGAATGGGCAGAGAAAACGTTGGGCCAGAAATTTCCAAATTTGAGTGCCTTAGCGCGGCATCTTGTTGATAATTTTCGAGTCGATACTCGGTCTTTGGCTGCTGTATGCATTCTTGCAACTTCGGACCAGCATGATGCTTCGTCTAATAAAGAGGTGATCTCGGATCTACCAACAACGCCTGTAGGTGGTAAGCCTGCTAAGCTTCGAGAGGCACAGTTGCAATTGCAGCGCAAGCTTCAGCAACGCGAGCATATAAAAGATCAGAAGCATCGTTGTCCCGATTCCATTGTACAGAGTAAAGAAAAAGCCATCGACACTAAAGGAAATGTCAGCAAAGGATGCAAGAAGGTTAAGTCCAATCAGTCACCTCAAGGTACAAatgcagcagcaacaacagttGTCGCACAAAACTCACTGGCAAAACTGAACTTATCCGCTATAGTCTATAACCGGCAAAGAAAGGTATCGAAAACTTGCAatcaacagcaacagcagcaacaaacTTGCAATGTCTCCCAAGAGTCTAACTGTGATAACCTAGTGGTACAATCGCGCGACGACAGACAGAGTAATAGCAACCTTAGAGTAATGATGAGTGCACAGCGCGATGTCAAAGGTAAAAATTCCAGGAAACGTGCCAATAATCCAATTGTAGCACAGCAGGAGCCCAGCCCTGAGAAACAGACGAAGCTCACGGAGGAGAGTCCAGAGCATTCCAACGCTTTGTTACCCAAGTTAGCGTCTATCCAACGCGCCGGCAAGATATCAGTGATACTAGCTAGCAATTCAAAATCTATCAAGTGCAAAGCAGAGACTGCGGACAGTCAACTTGCTAAAAACTGTGATATTGACTCGTCGAAGAGTTGTTCCACTACCGGCAACGTGGTGGAAACGTCCTCGGGACTTCTCACGAGGGACCAGATCCGCCTCCTGCAAGATACGCCGGTATTCAAGGATGGGAAGGTTCGTGACATCGACACGGACGCCTTGGACGATTATTTGAACGGCGGGAACAATTCGcaggagcaggaggaggagtTGCTACAGTATTTTCAGCAAAGTAGCTCGTCTAGTTCTGATGTGGAAACCAGCGTCGTTGGTTCCGATGCCGAGCAGATCTCTCGGTCGGACAAAGTGTCGCAGCTACGATTGATATTGCAACAGAATCTGAAAGCGCCGGTCATCGCCACCGACCTGACGCCCGTAGCCGCCGTACGGCAAAACGTTGCCGAGAGCGTTGTGGAGAAACGGGACCCCGTGCAGAAACATAATCTCATACTCCCGACACTCCTGAATCACCCTAATCCGGGCAATACGCGACGTCGTGTCAGTTTCGAAACGAATGTCGTCGAGCATGTCCAAGAGGCGGCGACGCCGAGTGTAGCCAATACTGTGCCACAGAGTCCAAATACGCGACGCAGAATATTTAACTTCACCCCGATCTCACCCGGACCGCATTCCCCTATTAACGGCCGCGCGTCCAAGTCGAACTCGGCGAACGCGAGTCCATTTGTATCTCCGCGTAACACCCCGGTGCTGAGGTCGCGCAGTAACGTGCAAGCCGGCAGTTCCAGATCGCGCGGCCAAAAGACGCTCTCTCGTTCCATCTCGTGCAGCGTGCCGTACACCATCAAGACGACGGACACCTTCATCGTACCGACGTCGAGCGGAGCGGAACACACGCGGCAAGTGCTGACAGTGGCAACGACCAAGTCGTCGGAGGTCGTTCTGAAGGGACCACCGTACACTGCGTACCTGGACTTGACGCCTCAGAAACAATTGTTAATCAATTATCCGAGTCAAGAGAATTTGCAAGAAATCAAGAATGTATATCAGAAGGGTCAGCTACCTCCGCCCGATCAGGAAATCACGGAGCTTCTTCACACTGGCAGACACTTGAGCAACGAGCAATTATTCTACAGATCGCAATCGGTGCCGTTGCACAGGATGATAAATCCCGTGTCCTTAATGTCTCCGATCTCCACGCAGCAATGCCTATCATCGGTACAGAGTCAAAGCTTCAATCCGTCGACGAGCAGTTCCGTTGCGCCTACCCCAGTACCGAGCGAGTACAATGACTTCGGTTCTTCCATCGGACAGGAGGGCGCGTACCTGTTGGACGATACGAATTTTATGTCGGACGACCAGCAGTTCTTGATGACGGACAAGGGGATCACGTCCGAGAACATTAATAACATTCTCACGATTTTGGACGAGGAGGGTCAGCCAAATTTGCAAATGTTGTCTGAACAGACTACGGAGGAGACGTTGAACAATACGATTGTTCTTGACGCTTTGCCGAacgccaatttaaatctatcggaGGAGGATATGTTGGATCCGTCGAGTACGCTGACGATCCTCGCTGACGCCGGTGGCGCGTTACAGAAAATAATGCAGTCGCGGTCGTATCCGAATACGCCGTTGCCGGCACCGGTATCCGCGTACGCGCCCTCGTATACGGAGGACAGCAACGGCTCCAGATCGTACCCGTCGACGCCTCTGCATACGATGCAATCCCAGGAGGTGTACCAGGATCCAGGCGAGCCGATACTGTCCAGTCCCATCCTTAATTCTATCAGTTTACAGGGCGACGCGAGAAACGTCGCTGTCGCCACCGTGACGGGTGTCACGGTCGGCACCGACGTTGACATCGCCGTTGCCGCTTCTTCCAACAATCTCTGCAGGAACGTCGCTGATCTTTTGGAGGCCAGTTTTCTCGGAGAAGCCGATACGGAGACGGACGATCTGGATCCTCTCGGTAATTTTGACGGCCTGCAAGATATGGATTCGTTGACGCCACTGTTCAACGAAGTCACGGAGCCTAATCGCTGA
Protein Sequence
MSTDSHDQTKSCKTSARSDEESAFDGKRIKKERSDVCVENGDAATVTAGTSTSSAAVTVTAAATAVAAAAAAATSTATATATATTVLEKRHSSAGRFASNGFHGDGDQLQDLVAAKFATLANHGASSKQDKIRIMIEDGISEESRARVDEIFSQVERLKLEEKLLLYLKLPLLLTNPSGTVDPLRQPLNPLGNRYEIHQTIMWIKTHLEEDPDVSLPKQEVYDEYNMYCTRNSMKPLSTADFGKVMKQVYPRVRPRRLGTRGNSRYCYAGMRKRIKLDPPTLPKISGSDTEEHSEENTTEEMLGAASTLIREWAEKTLGQKFPNLSALARHLVDNFRVDTRSLAAVCILATSDQHDASSNKEVISDLPTTPVGGKPAKLREAQLQLQRKLQQREHIKDQKHRCPDSIVQSKEKAIDTKGNVSKGCKKVKSNQSPQGTNAAATTVVAQNSLAKLNLSAIVYNRQRKVSKTCNQQQQQQQTCNVSQESNCDNLVVQSRDDRQSNSNLRVMMSAQRDVKGKNSRKRANNPIVAQQEPSPEKQTKLTEESPEHSNALLPKLASIQRAGKISVILASNSKSIKCKAETADSQLAKNCDIDSSKSCSTTGNVVETSSGLLTRDQIRLLQDTPVFKDGKVRDIDTDALDDYLNGGNNSQEQEEELLQYFQQSSSSSSDVETSVVGSDAEQISRSDKVSQLRLILQQNLKAPVIATDLTPVAAVRQNVAESVVEKRDPVQKHNLILPTLLNHPNPGNTRRRVSFETNVVEHVQEAATPSVANTVPQSPNTRRRIFNFTPISPGPHSPINGRASKSNSANASPFVSPRNTPVLRSRSNVQAGSSRSRGQKTLSRSISCSVPYTIKTTDTFIVPTSSGAEHTRQVLTVATTKSSEVVLKGPPYTAYLDLTPQKQLLINYPSQENLQEIKNVYQKGQLPPPDQEITELLHTGRHLSNEQLFYRSQSVPLHRMINPVSLMSPISTQQCLSSVQSQSFNPSTSSSVAPTPVPSEYNDFGSSIGQEGAYLLDDTNFMSDDQQFLMTDKGITSENINNILTILDEEGQPNLQMLSEQTTEETLNNTIVLDALPNANLNLSEEDMLDPSSTLTILADAGGALQKIMQSRSYPNTPLPAPVSAYAPSYTEDSNGSRSYPSTPLHTMQSQEVYQDPGEPILSSPILNSISLQGDARNVAVATVTGVTVGTDVDIAVAASSNNLCRNVADLLEASFLGEADTETDDLDPLGNFDGLQDMDSLTPLFNEVTEPNR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00125653;
90% Identity
iTF_01406247; iTF_01405430; iTF_01408796; iTF_01406969; iTF_00385023; iTF_00126443; iTF_00125653; iTF_00128706; iTF_00127188; iTF_00127926; iTF_00129469; iTF_01355055; iTF_01354368; iTF_00884794; iTF_00765280;
80% Identity
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