Tnyl024940.1
Basic Information
- Insect
- Temnothorax nylanderi
- Gene Symbol
- pita
- Assembly
- GCA_030848795.1
- Location
- JASTWM010000416.1:96958-100582[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.9e-05 0.0061 18.2 0.4 2 23 314 335 313 335 0.97 2 11 5.7e-05 0.0088 17.7 1.2 1 23 342 365 342 365 0.98 3 11 0.001 0.16 13.8 2.3 1 23 407 429 407 429 0.98 4 11 7.8e-07 0.00012 23.6 1.5 2 23 483 504 482 504 0.97 5 11 3.6e-05 0.0056 18.3 1.3 1 23 509 532 509 532 0.95 6 11 0.00014 0.022 16.5 0.2 1 23 570 592 570 592 0.97 7 11 1.3e-06 0.00021 22.8 1.7 1 23 602 624 602 624 0.96 8 11 6.5e-06 0.001 20.7 1.8 1 23 630 652 630 652 0.99 9 11 1.5e-05 0.0024 19.5 0.2 1 23 658 680 658 680 0.98 10 11 6.2e-05 0.0097 17.6 4.5 1 23 686 708 686 708 0.98 11 11 0.0018 0.27 13.0 0.5 1 21 714 734 714 735 0.94
Sequence Information
- Coding Sequence
- ATGGCAGTCCCGAGACTCCCGAGCGATGACGCGATGGTGAATAGCACGGTACGCGCGGAACGGCTCGTGGGCAACGAGTGCCGTATCTGCCTCAAGCCCTGCACGGAGGTGTGCCAGCTCTTTCGCGACGATGGCGGAATACCGGAGAAACTGATGGCCATTGCCGCCGTGCAGGTGGAGGAGGGGGACGGTCTGCCAGCTTACATCTGCTTGTCCTGCAATCATCTGCTCGACGTGTCCTACGACTTCAGATGCCAGATTCAGAATTCCGACATCAGGCTACGTCAGATCCTGAAGTCGCAGGTTCAACCTATGTTGCACGAGAAACATACGAAAGACATGAAGACCATGATGATGAAAGATATCACGGACGCCGTATCCGACGTGATGTCTTACAAGAAAGATAATCATGTCATAGAGCAGGACATTTACTCGTCTCACGATATCGTTACGTTCGACAGTACTGCCGTTCAGTCCGATTCGGCGATTAATGATGAATCTCACATAAGTCACAAGTTCATGCAAAAGACGGATGAAATTATCGAACCGAGCGAAAAAGATTCGTCATACGATGCATTTAAAGAGAACGTAGACAGTGCTGAAATGATGGAAATAGCTTTGTGTCACGAGGCAAACGTGGACGATGCGGCTGGCGATCACTCGGATCGATTGTCCAGTTCAACGACGGAAGACAGATGCATCAAGCAGGAGCAGTTACTGCTACCTGAAGACAACGAGACGTCGGGGAGTTTAACGGACGAGAATCGGGAAGATTCATTGAAGATTGAAGTTAAGAATGACGTATTATTGGAGGACTTCAACGACCACGAAGTTTCGAAGGAGATCGCGGTATTGAGAACGGACAATCAGGATACGAGGGGCGTCGCTAACTGCAGCGACGACGAGGAGAAGCCACTCATAAGCAGAACGACCAGGCAGAAGTGCGCGTATTGCATCAAGTCGTTCGCGACGAAGGTCGCGTTGCAGCGGCACATGAACGTGCACAAGCACACGAAGCTGCGCTACGTGTGCGTCGTGTGCGACAAGCAGTTCTCCAACATCGACAAATTGAAGGGCCACATGCTCACGTGTCACGAGAGTCAGACGACGGACGGTAAAGCGTCGCAGGATGACAGGAGGACGAGCAAAGTGTCGGCGAAAGTCACCAGAAGCGGCAACCTGACGGACAGCGCGAGGGAGGAGAAGAAAAACTTCAAGTTCACGTGTAAAGTCTGCTCGAAGCAATTCATATATCAGAAGTCCTTTGTGTCTCACGCCAAAAGCCATGCCGAATACGATATGGAAGTGGACGACGTGCTCGATCAGTTCACGAGTAAGACGACGGACGAGCAGAAGGATAGGATGCCGACGTTCAAGGAAAACGAAtccgaggaggaagaggaagaggaggacgacgacgacagcgACTTGCCGATCGAAAGTCTACAGTGTACTCAGTGCGGCAAGCTTTTCGCTACGAAGAGGAACCTGAAGAGGCACATCTCGACGCACAGCGGCTTGAAGTTCAATTGTTCGACATGCGGCAAAGGATTTTCGAGGCTTGACAAGCTCAAGGATCACGAACAGTCGAAGCACAAAGAGGAAATATTTGGCAATACTGACGACGAGGACGATGACGAGGAGGATAACGAGAGCAAAATCAACGAGAATTCCGAGAACCGAAAGAAGGACCGACACAACAGGCCACACAAGTGCGCGCTCTGTCCAAAGGCGTTCGCGCAGGCTCAATCCTTGGCAAACCACGTAGAGAGGCATAAACGGGTGAAGGATACGCAAAAGCGGTTTCTCTGCGAAAAGTGTAGCAAGTGCTTTGCTCAGAGTGGCTCGCTGGTGGCGCATATGCGCACACACACCGGCATCAAGCCGTACGTGTGCAACACGTGCAGTCGCGCCTTTACCAAGAGCACGTACCTGCAGCTGCACCTGAGAACTCACAGCGGTGAGAAACCGTATATCTGTCAGTACTGTAGCAGGGCGTTCGCTCGGGCCAACACTCTGGCGCGGCACATCACCATGCACACCGGTGAGGCCAAATACCATTGCAACATCTGCACCAAGTCATTCCGGCGACTGACCTCGCTGAACGagcacacgtacacgcacaCCGGCCAACGACCGTACGCGTGCAAACTCTGCACGAAGAGGTACAACAACGCCGGCTCATTATATGCTCACACGAAGAAGTGCAAGGCGCAGCAGTTGTCCAGCTCGACCACGACCACATTCGCGGTGTCCACGGCGGACAATGCGCCGCAGCAGAACGACACGACCATGCCCCAACTGCTGATTTATTCCCAGAGGAAGCTGGTGGAAGAGGCGACTATTGGTCAAGTCGTATCCACGCCGCAATACATGGTAACAAATGTGCATAATCAAAAAACTGTGCCCGCGACGGTGCCCGCCAACGTGATTCAGCCCTTCACCGTAGAGGACCCGAATGTATATAATTCAAAACAGTTTAAGAACTCGTATTACGCTATTTATccaaataacatataa
- Protein Sequence
- MAVPRLPSDDAMVNSTVRAERLVGNECRICLKPCTEVCQLFRDDGGIPEKLMAIAAVQVEEGDGLPAYICLSCNHLLDVSYDFRCQIQNSDIRLRQILKSQVQPMLHEKHTKDMKTMMMKDITDAVSDVMSYKKDNHVIEQDIYSSHDIVTFDSTAVQSDSAINDESHISHKFMQKTDEIIEPSEKDSSYDAFKENVDSAEMMEIALCHEANVDDAAGDHSDRLSSSTTEDRCIKQEQLLLPEDNETSGSLTDENREDSLKIEVKNDVLLEDFNDHEVSKEIAVLRTDNQDTRGVANCSDDEEKPLISRTTRQKCAYCIKSFATKVALQRHMNVHKHTKLRYVCVVCDKQFSNIDKLKGHMLTCHESQTTDGKASQDDRRTSKVSAKVTRSGNLTDSAREEKKNFKFTCKVCSKQFIYQKSFVSHAKSHAEYDMEVDDVLDQFTSKTTDEQKDRMPTFKENESEEEEEEEDDDDSDLPIESLQCTQCGKLFATKRNLKRHISTHSGLKFNCSTCGKGFSRLDKLKDHEQSKHKEEIFGNTDDEDDDEEDNESKINENSENRKKDRHNRPHKCALCPKAFAQAQSLANHVERHKRVKDTQKRFLCEKCSKCFAQSGSLVAHMRTHTGIKPYVCNTCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCNICTKSFRRLTSLNEHTYTHTGQRPYACKLCTKRYNNAGSLYAHTKKCKAQQLSSSTTTTFAVSTADNAPQQNDTTMPQLLIYSQRKLVEEATIGQVVSTPQYMVTNVHNQKTVPATVPANVIQPFTVEDPNVYNSKQFKNSYYAIYPNNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01476429;
- 90% Identity
- iTF_01406734;
- 80% Identity
- -