Basic Information

Insect: Temnothorax nylanderi
Gene Symbol: -
Assembly: GCA_030848795.1
Location: JASTWM010000075.1:499802-503112[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0063 0.98 11.3 3.8 1 23 2 25 2 25 0.96

2 20 1.4e-05 0.0022 19.6 0.5 1 23 31 53 31 53 0.97

3 20 0.0047 0.73 11.7 4.3 1 23 59 81 59 81 0.98

4 20 0.00037 0.058 15.2 1.5 1 23 87 109 87 109 0.98

5 20 8.6 1.3e+03 1.4 8.1 1 23 115 137 115 138 0.96

6 20 0.00011 0.018 16.8 2.6 1 23 154 177 154 177 0.95

7 20 0.79 1.2e+02 4.7 0.8 3 23 188 208 186 208 0.95

8 20 5.2e-07 8e-05 24.1 1.2 1 23 214 236 214 236 0.98

9 20 2.1e-05 0.0033 19.1 1.8 1 23 242 264 242 264 0.97

10 20 3.9e-07 6.1e-05 24.5 0.7 1 23 270 292 270 292 0.99

11 20 0.4 63 5.6 0.5 2 23 328 350 327 350 0.96

12 20 0.00011 0.017 16.8 1.0 1 23 356 379 356 379 0.97

13 20 0.65 1e+02 4.9 0.4 3 23 386 407 385 407 0.96

14 20 6.2e-05 0.0097 17.6 0.2 1 23 413 435 413 435 0.98

15 20 0.048 7.5 8.5 0.3 2 23 442 464 441 464 0.94

16 20 2.3e-05 0.0036 19.0 2.1 1 23 484 507 484 507 0.96

17 20 0.0027 0.43 12.4 0.1 1 23 518 540 518 540 0.95

18 20 0.0052 0.81 11.6 4.0 1 23 546 568 546 568 0.97

19 20 6.5e-07 0.0001 23.8 1.1 1 23 574 596 574 596 0.98

20 20 2.3e-05 0.0035 19.0 0.1 1 21 602 622 602 623 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0063	0.98	11.3	3.8	1	23	2	25	2	25	0.96
2	20	1.4e-05	0.0022	19.6	0.5	1	23	31	53	31	53	0.97
3	20	0.0047	0.73	11.7	4.3	1	23	59	81	59	81	0.98
4	20	0.00037	0.058	15.2	1.5	1	23	87	109	87	109	0.98
5	20	8.6	1.3e+03	1.4	8.1	1	23	115	137	115	138	0.96
6	20	0.00011	0.018	16.8	2.6	1	23	154	177	154	177	0.95
7	20	0.79	1.2e+02	4.7	0.8	3	23	188	208	186	208	0.95
8	20	5.2e-07	8e-05	24.1	1.2	1	23	214	236	214	236	0.98
9	20	2.1e-05	0.0033	19.1	1.8	1	23	242	264	242	264	0.97
10	20	3.9e-07	6.1e-05	24.5	0.7	1	23	270	292	270	292	0.99
11	20	0.4	63	5.6	0.5	2	23	328	350	327	350	0.96
12	20	0.00011	0.017	16.8	1.0	1	23	356	379	356	379	0.97
13	20	0.65	1e+02	4.9	0.4	3	23	386	407	385	407	0.96
14	20	6.2e-05	0.0097	17.6	0.2	1	23	413	435	413	435	0.98
15	20	0.048	7.5	8.5	0.3	2	23	442	464	441	464	0.94
16	20	2.3e-05	0.0036	19.0	2.1	1	23	484	507	484	507	0.96
17	20	0.0027	0.43	12.4	0.1	1	23	518	540	518	540	0.95
18	20	0.0052	0.81	11.6	4.0	1	23	546	568	546	568	0.97
19	20	6.5e-07	0.0001	23.8	1.1	1	23	574	596	574	596	0.98
20	20	2.3e-05	0.0035	19.0	0.1	1	21	602	622	602	623	0.96

Sequence Information

Coding Sequence: ATGCACCAATGCGTCAAGTGCGGGGCTCGTTTCCGTCACACGCGAAAGCTCGTGGAGCACCTGAAGAACCTGCACAACATCGACCGGGCGTTCAGCTGCGACGAGTGCAACAAGACGTTTCGCAGCCCGATGAACATAGCTCGTCACAAACTGATCCACACGGGGCTGAAAGCGTTCACCTGCGAACTCTGCGAGTACAGCACCAATCAGAAGTCCAATCTGGAGTGCCATCGTCGACGGCACGCGAAGGACTACAGCTTCAAGTGCGAGACGTGCGGCAGAGGCTTTTTCCACAGGGCTGAGTACCTGGACCACCAGAACGCGCACACGAACAAGCGTCTGTATCGTTGCGAGCACTGCTGCAAGAATTACCTGTACAAGAAGAACCTGTCGGTGCACCTGGTGACGCATCACGCCGGCAAACATGCCGCCGCGGTCACGAGGAGCGCGAGGACCAGGCACGCGTGCAAGTTCTGCCCGGAGAGATTCGTGTACAAGAGGCTGCTGGAGAGGCACATGAAGAACCAGCACGGATTCGCGGACGCGCCAGCGAAGCACCTGTGCGATCTGTGCGGCGCGGAACTGTCGTCGATGAGACGACTGCTGGTGCACAAACGCAATCACGCGGGCGAGAGGATCTTCGAGTGCGACACGTGCGACAAGAGGTTCGCCAGCAAGGAGAATCTGAGCATTCACAAGCGGACGCACACCGGCGACAAGCCGCACGTGTGCCAGCAGTGCGGCCGCGGTTTCACGCAGAGGACATCCCTGGTCCTGCATCTGCGGTACCACTCGGATCAGAGGCCTTACCAGTGCTTGGACTGCGGCAAGGGATTCGTGTCCAACACCTTACTCAAGAGGCATCGCAAAGTGCACGAGAAGATCGTGCAGCCGAAGCTCCAGTGGACAAATAATCACGATTTGAAGGTGAAGAATGAGGACCTACCTGATCTTGGACAAAAATTCGAAGGTGGCGAGAAGGTCTGCGAGCTGTGCCAGGCAAAATTTCACTTTGTTACCAGACTGGTCGCGCACCTGAGAATAGCGCACGGCATCCTTCGGCCCTTTAAGTGCGTCACCTGCGACAAGAATTATCCCCAGCAGTTCATGCTTAACGCCCACGTGAAGAAATCGCACACGCCGAAGACCGCGCCGTGTAACCAGTGCAGCTTCATGGGTGTCAACGTGACCGACGTGGAGAGGCACAGGCGGCGACGTCACCGAGCCCCGCCGAAATTCACGTGCGAGATTTGCAGCCAGGATTTCGCCGATAAGGACACTCTGATCGCGCACACGACGATGCACGACTTCATGCAGTATCAGCGATGCAACGCGTGCGGTAGCATCTTCAACGATGTGTACAGCTTGAAGGAACACAATCGTCTCTACCACTACGATCCTGCGTCGGACGAGAAGTCGTTCGAGGAGCCCAGCGAGAACGAGTCCGAGCACAAATGCGACGTTTGCGGCAGGGCCTACAAGTATAAGTCGATGCTGAAGCAGCACAAGATCAGAGCTCACGGTGACCAGTCGAACCACGAGAGACGCAGGTACCTTTGCGCTCTGTGCGGCAAGGAGTTGAAGACGGCGAAGGGCCTCGAAATCCACAACAGATCGCACACCGGCGAAAAGCCGTATACTTGCGAGGTGTGCGGCAAGTGTTTCGCCTGTGAGACCCTGTTGAGGACCCACAAAGTCACCCACACCGGAGAAAGGAAGTACTCGTGCGACCAATGCGGCAAGGCTTTCACGCAGAGGTCCACCCTGGTTGTTCACAAGCGATATCACACGGGCGAACGACCGTACGTTTGTCCTCGATGCGGTAAGGGTTTTGTCACACGAACTGTCCTTAATACTCACATGAAGTCCTGTCGTTGA
Protein Sequence: MHQCVKCGARFRHTRKLVEHLKNLHNIDRAFSCDECNKTFRSPMNIARHKLIHTGLKAFTCELCEYSTNQKSNLECHRRRHAKDYSFKCETCGRGFFHRAEYLDHQNAHTNKRLYRCEHCCKNYLYKKNLSVHLVTHHAGKHAAAVTRSARTRHACKFCPERFVYKRLLERHMKNQHGFADAPAKHLCDLCGAELSSMRRLLVHKRNHAGERIFECDTCDKRFASKENLSIHKRTHTGDKPHVCQQCGRGFTQRTSLVLHLRYHSDQRPYQCLDCGKGFVSNTLLKRHRKVHEKIVQPKLQWTNNHDLKVKNEDLPDLGQKFEGGEKVCELCQAKFHFVTRLVAHLRIAHGILRPFKCVTCDKNYPQQFMLNAHVKKSHTPKTAPCNQCSFMGVNVTDVERHRRRRHRAPPKFTCEICSQDFADKDTLIAHTTMHDFMQYQRCNACGSIFNDVYSLKEHNRLYHYDPASDEKSFEEPSENESEHKCDVCGRAYKYKSMLKQHKIRAHGDQSNHERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHKVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00869051;
90% Identity: iTF_01409381;
80% Identity: -