Tnyl009361.1
Basic Information
- Insect
- Temnothorax nylanderi
- Gene Symbol
- -
- Assembly
- GCA_030848795.1
- Location
- JASTWM010000075.1:547912-553486[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0067 1 11.2 0.1 1 20 58 77 58 79 0.95 2 19 7.1e-05 0.011 17.4 1.0 1 23 96 118 96 118 0.98 3 19 8.1e-05 0.013 17.2 1.9 2 23 210 231 209 231 0.95 4 19 0.00055 0.085 14.6 1.4 1 23 235 257 235 257 0.97 5 19 2.4e-05 0.0038 18.9 1.1 3 23 265 285 264 285 0.98 6 19 6.1e-05 0.0096 17.6 4.3 2 23 292 313 291 313 0.96 7 19 0.18 28 6.7 0.3 3 23 352 371 351 371 0.95 8 19 1.8e-05 0.0028 19.3 0.4 3 23 379 399 378 399 0.98 9 19 3.8e-07 5.9e-05 24.6 1.9 1 23 405 427 405 427 0.99 10 19 0.15 24 6.9 0.8 1 23 514 536 514 536 0.89 11 19 4.8e-06 0.00075 21.1 0.8 2 23 545 567 545 567 0.96 12 19 3.6e-05 0.0057 18.3 4.0 1 23 573 595 573 595 0.98 13 19 0.081 13 7.8 0.4 1 23 599 621 599 621 0.97 14 19 1.7e-05 0.0027 19.4 1.5 2 23 628 649 627 649 0.96 15 19 6.3e-06 0.00098 20.7 0.2 1 23 655 677 655 677 0.98 16 19 0.066 10 8.1 0.7 1 23 683 705 683 705 0.97 17 19 4.2e-06 0.00066 21.3 0.8 2 23 712 733 711 733 0.97 18 19 9.6e-07 0.00015 23.3 0.6 1 23 739 761 739 761 0.98 19 19 1.7e-07 2.7e-05 25.7 1.9 1 23 767 789 767 789 0.99
Sequence Information
- Coding Sequence
- ATGAGGACTTTTGATCAGCGTCACATGAATGAACATTTCCCGGAaACTAAAAACTGGAGTTCCAGGACacaacagaaaaaaattgcgaTAAAAAAGGAAGCTCAAGGTACGTCCTTCGTTATCCTTCAAGAGATTGGCGGCAAAACTATTCTTGTTCAGAAGGTAAACGCGTACTACTGTGATTCATGCAACGAAGATTTTGATACAGAAGCCAGTTTGATAAGGCATAGAACGGAGCAATCGATACTTAGAACCCGAGAAGCGTTGCGCCAAGCAGAAAAGAAACACAAGTGTGACATATGTGGACAGATGTTCGTGAAAGAGTTGCAATTGATCAAGCATCGCCAGATACATTGTAATCCTCTAGACATACAGAAAAAAGATTCTCTGgacatacaaaaaaaatatcttctaGACATACAGAAAAAGGATTCTCTAGACATACAGAAAAAGGATCCTCTAGACATACAGAAAAAATATCCTCTAGACATACAGATAAAATATCCTCtaaatatacagaaaaaatatcCTCTAAATATACAGAAGAAAcaggaattgaaaaaaatagtcaCGAAAAAGAAAGTCGACAAGAGTCGAGAAGAGAACAAGGAATCGGAAAATGTCATTAAATGTGACCAGTGTGATAAAGTATTTAAGAAGAAAAGGTATTTGAACGTGCACAAAACGTTGCATAGTGAACCGCACATTTGTAATGTGTGCGGTGCGAAGCTGACgtcagattattatttaagaatGCACATGAGGCGACACAATAAGGAATTTACGGAATTCTGCAACATTTGTAATAAAGGCTTCTACTTAAAGGCAAATCTGAAAACTCACATGAGCATGCACACCGATCAGAAGCCATGCATCTGCGAGATCTGCCATAAGACCTTCGGCAATCGAACTTACCTCCGAATTCATATGAAGCTTCACAGTCAGCCCGAGACGAGGAAGAAATTCAAGTGTGATATATGCAGCTTCGAGACGTTTTATAGCTATTGCCACAAGGAACACATGTGGACTCATACGGGCGAGAGCCAAGTGGCATGTGAAGTATGTGGCAAGCTAATCAGGCGACAATACATGAAGACTCATATTAGGATTCACACTGGCGAGAAACCAGAGATTTGCGAGTTTTGTGGCAAGGCGTTCAGCGCCAGGGTATATCTGATTAAACATCGGCGAACTCACACTGGTGAAAAGCCTTACAGCTGCAAAATCTGCAACAAACGTTTTACCCAACGGGGCACTCTTAGTGCGCATCTTCGAAGACACGAGAATCCTGAatGCAACGAGATTGACATAGAAGACGTAAAGCTGGACTCGATCGACGAATTGCAAGGTATAGAGTTAGTACGATATCAAGATGAAGTATCTGCGGTGGAAGAGTATCATCACGTTAGTCATCAAGAAATAGTTATGGAAACGATCGAATATAGGACTGAAGACTCGAACGACAAACTGGAATCTGCGTCGGAGATACATGTCATAAAACGGGTTTCCGAACACGATTCGAGTCGCAAGCGTGCGGTTTACGAGTGTGAAATCTGTGGGAAGCGAATACTCAAGAAGCTGCAGTTTTTGAAGCATAGACAAGACCACGAGAGGAATTCGAAGACCGAAGGTCGTTGCGAGGAGTGCGATAAAGTGTTCGACAATGAGGAGAAGTTGCGAAAGCATATGATAAAGACACATCAGAAAGAGAAACCTTTTCAATGCGTTCTTTGCGGCAAGTGTTTCAAGACCGAGGAGTTCTTGAAGACCCACTTGAAGCAGCATAACAAACGTTTCACCTGCGACATATGTGGTGTGTCGAAGGTTTCCGGATACGATCTGCGTCTGCACAAGAAGAAGCACAATCAGGAATATGTCATTCATTGTGAGATTTGCAACAAGGGCTTCTACACGAATCAAACGCTGGAGCGGCATTTGCTCACGCACACCGGCGAGAAGCCGTTTGtgtgtaaaatatgtaataccGCGTACGCGAGCGCAGCGTATCTCAACATGCATATGAGGTCCCatggcgagagagagaagcacAAGTGTAATATCTGCGATTTCGAGAGCTACTGGAAGGCCGCGCTAAAAGTGCATCTTAAGATACACACCGGCGAGAATCAGATTACGTGCGAGGTGTGCGGAAAGTCCGTGAGCAGCAAGACGTATTTGCATATTCATATGCGTATACATTCAGGCGAGAAACCGCATGTTTGCGAGGTGTGCGGAAAGGCGTTCAGCGTACGGAAGTATCTGATTGTACACCTAAGAACGCATACCGGCGAGAGACCTTACGAGTGTAAGGTGTGCCAAAAGAGATTTACGCAACAGGGCTCACTAAACTCACATATGAAGTCTCATAATGAGAGCAAGtga
- Protein Sequence
- MRTFDQRHMNEHFPETKNWSSRTQQKKIAIKKEAQGTSFVILQEIGGKTILVQKVNAYYCDSCNEDFDTEASLIRHRTEQSILRTREALRQAEKKHKCDICGQMFVKELQLIKHRQIHCNPLDIQKKDSLDIQKKYLLDIQKKDSLDIQKKDPLDIQKKYPLDIQIKYPLNIQKKYPLNIQKKQELKKIVTKKKVDKSREENKESENVIKCDQCDKVFKKKRYLNVHKTLHSEPHICNVCGAKLTSDYYLRMHMRRHNKEFTEFCNICNKGFYLKANLKTHMSMHTDQKPCICEICHKTFGNRTYLRIHMKLHSQPETRKKFKCDICSFETFYSYCHKEHMWTHTGESQVACEVCGKLIRRQYMKTHIRIHTGEKPEICEFCGKAFSARVYLIKHRRTHTGEKPYSCKICNKRFTQRGTLSAHLRRHENPECNEIDIEDVKLDSIDELQGIELVRYQDEVSAVEEYHHVSHQEIVMETIEYRTEDSNDKLESASEIHVIKRVSEHDSSRKRAVYECEICGKRILKKLQFLKHRQDHERNSKTEGRCEECDKVFDNEEKLRKHMIKTHQKEKPFQCVLCGKCFKTEEFLKTHLKQHNKRFTCDICGVSKVSGYDLRLHKKKHNQEYVIHCEICNKGFYTNQTLERHLLTHTGEKPFVCKICNTAYASAAYLNMHMRSHGEREKHKCNICDFESYWKAALKVHLKIHTGENQITCEVCGKSVSSKTYLHIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHNESK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01405939;
- 90% Identity
- iTF_01405939;
- 80% Identity
- -