Tame003588.1
Basic Information
- Insect
- Temnothorax americanus
- Gene Symbol
- -
- Assembly
- GCA_030770215.1
- Location
- JASTWO010000028.1:138741-146212[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0037 0.57 11.9 0.1 1 20 51 70 51 72 0.95 2 19 6.4e-05 0.0098 17.4 1.0 1 23 89 111 89 111 0.98 3 19 7.3e-05 0.011 17.2 1.9 2 23 203 224 202 224 0.95 4 19 0.0052 0.79 11.4 0.9 1 23 228 250 228 250 0.97 5 19 2.2e-05 0.0034 18.9 1.1 3 23 258 278 257 278 0.98 6 19 5.5e-05 0.0085 17.6 4.3 2 23 285 306 284 306 0.96 7 19 0.16 25 6.7 0.3 3 23 345 364 344 364 0.95 8 19 2.8e-05 0.0043 18.6 0.4 3 23 372 392 371 392 0.98 9 19 1.8e-07 2.8e-05 25.4 1.5 1 23 398 420 398 420 0.99 10 19 0.14 21 6.9 0.8 1 23 507 529 507 529 0.89 11 19 2.5e-05 0.0038 18.7 0.5 2 23 538 560 538 560 0.96 12 19 3.3e-05 0.005 18.3 4.0 1 23 566 588 566 588 0.98 13 19 0.16 25 6.7 0.3 1 23 592 614 592 614 0.96 14 19 1.5e-05 0.0024 19.4 1.5 2 23 621 642 620 642 0.96 15 19 1e-05 0.0016 19.9 0.2 1 23 648 670 648 670 0.98 16 19 0.059 9.1 8.1 0.7 1 23 676 698 676 698 0.97 17 19 9.3e-07 0.00014 23.2 0.2 2 23 705 726 704 726 0.97 18 19 8.8e-07 0.00014 23.3 0.6 1 23 732 754 732 754 0.98 19 19 1.5e-07 2.4e-05 25.7 1.9 1 23 760 782 760 782 0.99
Sequence Information
- Coding Sequence
- ATGGCTATGAACAGTGGCAgAACTAAAAAATGGAGTTCCAGGACacaacagaaaaaaattgcgataaaaaaGGAAGCTCAAAGTCTTACGTCTTTCGTTATCCTTCAAGAGATTGGCGGCAAAACTATTCTTGTTCAGAAGGTAAACTCGTACTACTGCGATTCATGCAACGAAGAATTTGATACAGAAGCCAGTTTGATAAGGCATAGAACGGAGCAATCGATACTTAGAACCCGAGAAGCGTTACGCCAAGCAGAAAAGAAACACAAGTGTGACATATGTGGACAGATGTTCGTGAAAGAGTTGCAATTGATCAAGCATCGCCAGATACATTGTAATCCTCTAGATATACAGAAAATAGAGTCTCTGGacatacaaaaaaaagatcCTCTAGACATACAGAAAAAAGATCCTTTAGACATACAGAAAAAATATCCTCTAGACATACAGATAAAATATCCTTTAGACATACAGATAAAATATCCTCtaaatatacagaaaaaatatCTTCTAAATATACAGAAGAAACaggaattgaaaaaaatagtcACGAAAAAGAAAGTAGACAAGAGCCGAGAAGAGAACAAGGAATCGGAAAATGTCATTAAATGTGACCAGTGTGACAAAGTATTTAAGAAGAAAAGGTATTTGAACGTGCACAAAACGTTGCATAGTGAACCGCACATTTGTAATGTGTGCGGTGCGAAGCTGACcgcagattattatttaagaatgCACATGAGGCGACACAATAAGGAATTTACGGAATTCTGCAACATTTGTAATAAAGGTTTCTACTTAAAGGCAAATCTGAAAACTCACATGAGCATGCACACCGATCAGAAGCCATGCATCTGTGAGATCTGCCATAAGACTTTCGGCAATCGAACTTACCTCCGAATTCATATGAAGCTTCACAGTCAACCCGAGACGAGGAAGAAATTCAAGTGCGATATATGCAGCTTCGAGACGTTTTATAGCTATTGCCACAAGGAGCACATGTGGACTCATACGGGCGAGAGCCAAGTGGCATGTGAAGTATGTGGCAAGCTAATCAGGCGACAATACATGAAGACTCATATTAGGATTCACACTGGCGAGAAACCAGAGATTTGCGAGTTTTGTGGCAAGGCGTTCAGCGCCAGGGTATATCTGGTTAAACATCGGCGAACTCACACTGGTGAAAAGCCTTACAGCTGCAAAATCTGCGACAAACGTTTTACCCAACGGGGCACTCTTAGTGCGCATCTTCGAAGACACGAGAATCCTGAatGCAACGAGATTGACATAGAAGACGTAAAGCTGGACTCGATCGACGAATTGCAAGGTATAGAGTTAGTACGATATCAAGATGAAGTATCTGCGGTGGAAGAGTATCATCACGTTAGTCATCAAGAAATAGTTATGGAAACGATCGAATATAGGACTGAAGACTCGAACGACAAACTGGAATCTGCGTCGGAGATACATGTCATAAAACGGGTTTCCGAACACGATTCGAGTCGCAGGCGTGCGATTTACGAGTGTGAAATTTGTGGGAAGCGAATACTCAAGAAGCTGCAGTTTTTGAAGCATAGACAAGACCACGAGAGGAATTCGAAGACCGAAGGTCGTTGCGAGGAGTGCGATAAAGTGTTCGACAATGAGGAGAAGTTGCGAAAGCATACGATAAAGGCACATCAGAAAGAGAAACCTTTTCAATGCGTTCTTTGCGGCAAGTGTTTCAAGACCGAGGAGTTCTTGAAGACCCACTTGAAGCAGCATAACAAACGTTTCATCTGCGACATATGTGGCGTGTCGAAGGTTTCCGGATACGATCTGCGTCTACACAAGAAGAAACACAATCAGGAATATGTCATTCATTGTGAGATTTGCAACAAGGGCTTCTACACGAATCAAACGCTGGAGCGGCATTTGCTCACGCACACCGGCGAGAAGCCGTTTGTGTGTAAAGTATGTAATACCGCGTACGCGAGCGCAGCGTATCTCAACATGCATATGAGGTCCCatggcgagagagagaagcacAAGTGTAATATCTGCGATTTCGAGAGCTACTGGAAGGCCGCGCTAAAAGTGCATCTTAAGATACACACCGGCGAGAATCAGATTACGTGCGAGGTGTGCGGAAAGTCCGTGAGCAGCAAGACGTATTTGCAAATTCATATGCGTATACATTCAGGCGAGAAACCGCATGTTTGCGATGTATGCGGAAAGGCGTTCAGCGTACGGAAGTATCTGATTGTACACCTAAGAACGCACACCGGCGAGAGACCTTACGAGTGTAAGGTGTGCCAAAAGAGATTTACGCAACAGGGCTCACTAAACTCGCATATGAAGTCTCATAATGAGAGCAAGTga
- Protein Sequence
- MAMNSGRTKKWSSRTQQKKIAIKKEAQSLTSFVILQEIGGKTILVQKVNSYYCDSCNEEFDTEASLIRHRTEQSILRTREALRQAEKKHKCDICGQMFVKELQLIKHRQIHCNPLDIQKIESLDIQKKDPLDIQKKDPLDIQKKYPLDIQIKYPLDIQIKYPLNIQKKYLLNIQKKQELKKIVTKKKVDKSREENKESENVIKCDQCDKVFKKKRYLNVHKTLHSEPHICNVCGAKLTADYYLRMHMRRHNKEFTEFCNICNKGFYLKANLKTHMSMHTDQKPCICEICHKTFGNRTYLRIHMKLHSQPETRKKFKCDICSFETFYSYCHKEHMWTHTGESQVACEVCGKLIRRQYMKTHIRIHTGEKPEICEFCGKAFSARVYLVKHRRTHTGEKPYSCKICDKRFTQRGTLSAHLRRHENPECNEIDIEDVKLDSIDELQGIELVRYQDEVSAVEEYHHVSHQEIVMETIEYRTEDSNDKLESASEIHVIKRVSEHDSSRRRAIYECEICGKRILKKLQFLKHRQDHERNSKTEGRCEECDKVFDNEEKLRKHTIKAHQKEKPFQCVLCGKCFKTEEFLKTHLKQHNKRFICDICGVSKVSGYDLRLHKKKHNQEYVIHCEICNKGFYTNQTLERHLLTHTGEKPFVCKVCNTAYASAAYLNMHMRSHGEREKHKCNICDFESYWKAALKVHLKIHTGENQITCEVCGKSVSSKTYLQIHMRIHSGEKPHVCDVCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHNESK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01407567;
- 90% Identity
- iTF_01407567;
- 80% Identity
- -