Basic Information

Insect: Temnothorax nylanderi
Gene Symbol: -
Assembly: GCA_030848795.1
Location: JASTWM010000056.1:2611404-2615584[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 2.8e-12 2.1e-09 38.2 0.0 1 39 301 340 301 344 0.90

2 4 1.7e-12 1.3e-09 38.9 0.1 2 39 356 393 355 396 0.94

3 4 2.5e-18 1.9e-15 57.6 0.0 1 45 410 455 410 455 0.97

4 4 4.5e-18 3.5e-15 56.7 0.1 1 42 462 504 462 505 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	2.8e-12	2.1e-09	38.2	0.0	1	39	301	340	301	344	0.90
2	4	1.7e-12	1.3e-09	38.9	0.1	2	39	356	393	355	396	0.94
3	4	2.5e-18	1.9e-15	57.6	0.0	1	45	410	455	410	455	0.97
4	4	4.5e-18	3.5e-15	56.7	0.1	1	42	462	504	462	505	0.97

Sequence Information

Coding Sequence: ATGCGCGACTCGTTACTTTTGAAGTTACACGTTACGTTGGACTTTCGACGACTTAGTTTTCCGTTTCTTCCACAGTCGCTCTTGAAGACGGCCGACCAGCTAAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAACAGGGACGGTCCACCACCCGTGAGCTTGAGCTCGCCGCCGAGGGAGTCCGGCACCCCGAGGTTGAACTACACGAAGCTGAAGAAGCACCATCAGCGGTACAAGAGACCCAGAATCGAGCGGCCCGCGTTCGAGTCGCGCGCCACCGATCCGAGACACTACGATCGCTACAAAGAGGAGGAGGCCAACAACGATTACAGCCGCGATAACAAAGAGAACCATCGGGACTGGCAGGCTGAAGATGAAGAGTGCACGGAgacagcaacagcagcagtaGCACTGGAAACTTGCCagcgtaataataataacaataacaacaaCAACGGTAACGGCACGAGTAACAACGGTGACATGTTCTGTCACACAGGGCTAGGGCACTACGGCCACCATCCGGATCCCGGAGAGGTCGATTTGCCCCCCGAGACCCAACCGACCCCACCCAGTGCCACCCTGGTCGGCACCACCATCACTCACCTGAGGGACCCGGATCATCATACAGAGATTCAGAACTGCGACAGCGTCAAGATCAAGTTCGAGACGCTGCACACGATGGACTCCTCCGACACAATCGACATAGACAGCCACATGTCGGATCGGGCGAGCGTGAGCTCGAAAAACGCCGCCGACAGCGACAACATGATGATGATAACACCGGAGTTGCTGGGACTGATGCCGTCGGGAAGCTCCGGCCAGTCGGACTCGGGCGAGAACAATTCGAGGGGGCACAGCGGACAGTCGAGCTCGCATCATCACGGTTCAAAATCGTGGACGCAAGAGGACATGGACGCGGCTTTAGAGGCGCTGAGAAATCACAACATGAGCCTGACGAAAGCTTCGGCAACATTCGGTATTCCCTCGACGACTCTGTGGCAACGGGCACATCGATTGGGCATCGACACGCCGAAGAAAGATGGCCCCACGAAATCCTGGAGCGACGAGAGCTTGAACAACGCTTTAGAGGCGTTGCGCACCGGCTCCATTTCGGCTAACAAAGCGTCCAAGGCGTACGGCATACCTTCCAGTACGTTGTACAAGATCGCCAGGAGAGAAGGCATCAGGCTGGCCGCGCCGTTCAACGCGAGTCCCACTACGTGGACGCCGGCCGATCTGGACCGCGCCCTAGAAGCAATAAGATCTGGTCAGACCTCCGTACAGAGAGCGTCGACGGAATTCGGTATACCTACGGGGACTCTATACGGAAGATGCAAGCGGGAAGGAATCGAGCTTAGCAGGAGCAATCCCACGCCGTGGAGCGAAGACGCTATGACTGAAGCTCTCGAGGCCGTCAGATTAGGGCACATGAGCATAAATCAAGCGGCGATCCACTACAATCTACCGTATTCGTCACTGTACGGACGCTTCAAGAGAGGCAAATACGAGGAACCCGTCGTCGGCGACCTCTCGCAGGATGGCACCAGTCCGCATTTCCATCAAAGCCCCAACCAGAATCACTCGTCCGCCCTTCCAGATCAAATGCCTTATCCGGGCAGCTGA
Protein Sequence: MRDSLLLKLHVTLDFRRLSFPFLPQSLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRPRIERPAFESRATDPRHYDRYKEEEANNDYSRDNKENHRDWQAEDEECTETATAAVALETCQRNNNNNNNNNGNGTSNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDLSQDGTSPHFHQSPNQNHSSALPDQMPYPGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_01520386;
80% Identity: -