Tnyl014476.1
Basic Information
- Insect
- Temnothorax nylanderi
- Gene Symbol
- foxo_1
- Assembly
- GCA_030848795.1
- Location
- JASTWM010000157.1:224081-224659[+]
Transcription Factor Domain
- TF Family
- Fork_head
- Domain
- Fork_head domain
- PFAM
- PF00250
- TF Group
- Helix-turn-helix
- Description
- The fork head domain is a conserved DNA-binding domain (also known as a winged helix) of about 100 amino-acid residues. Drosophila melanogaster fork head protein is a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [1]. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [1, 2, 3]. The fork head domain binds B-DNA as a monomer [2], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.9e-16 1.8e-12 48.4 0.1 4 68 113 183 111 190 0.87
Sequence Information
- Coding Sequence
- ATGATGGATTCGGTGCCGGTCGCGGCGTCGGGGTCGATGACCCCgtcgcagcagcagcagcagcagcagcagcaacagcaacagcaacagcagcaggcGCAGAAGAAGGGGGTCTCGTTCGAGTTCTCGACCTCGCCGGATCTGGAGACCGGATTCGAGCCGCAAACCCGCGCGCGGTCCAACACATGGCCGTTACCGCGGCCAGAAGGGTACGTGGAAGGTAACGCGCCGGCCACGAAGGAGGGTGCCGAGAGCGGTACGCCGCCGCATCAGGGGCAGCTCGCCCAGGGTCTGCTGCCGGTGAAGAAGAACTCGTCGCGGAGGAACGCCTGGGGGAACTTGAGCTACGCCGACCTGATCACCCAGGCGATCACCAGCGCGCCCGATCAGCGGCTCACCCTCTCGCAGATCTACGAGTGGATGGTCCAGAACGTGTCCTACTTCAAGGACAAGGGCGACAACAACAGCAGTGCCGGTTGGAAGGTAAGTGAATTTTCGCGTCGCACACTCTCCGCCGAGGTTGCGTTTAACGCCTTGCCTTCGAGGCAAAGCCGGAGCACGGAGTTTGCCAAGATCTAA
- Protein Sequence
- MMDSVPVAASGSMTPSQQQQQQQQQQQQQQQQAQKKGVSFEFSTSPDLETGFEPQTRARSNTWPLPRPEGYVEGNAPATKEGAESGTPPHQGQLAQGLLPVKKNSSRRNAWGNLSYADLITQAITSAPDQRLTLSQIYEWMVQNVSYFKDKGDNNSSAGWKVSEFSRRTLSAEVAFNALPSRQSRSTEFAKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01405510; iTF_01406316; iTF_01407984; iTF_00016514; iTF_00417380; iTF_01423462; iTF_01408884; iTF_01422055; iTF_00385096; iTF_00884875; iTF_00109649; iTF_01523187; iTF_01269615; iTF_01268837; iTF_01271014; iTF_01267367; iTF_01268089; iTF_01266715; iTF_00867959; iTF_00868588; iTF_00867215; iTF_01254618; iTF_00014547; iTF_01245043; iTF_00729883; iTF_01422742; iTF_00730555; iTF_00279790; iTF_00280471; iTF_00729114; iTF_01421377; iTF_00264093; iTF_00127264; iTF_00126519;
- 90% Identity
- iTF_01406316;
- 80% Identity
- -