Basic Information

Insect: Temnothorax longispinosus
Gene Symbol: -
Assembly: GCA_004794745.1
Location: QBLH01003436.1:1488773-1492622[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.12 9.1 6.5 4.5 1 23 383 405 383 405 0.98

2 10 0.43 33 4.8 3.6 1 21 411 431 411 434 0.96

3 10 0.00014 0.011 15.7 0.6 2 19 441 458 440 462 0.89

4 10 1.6e-05 0.0012 18.7 3.1 1 23 468 490 468 490 0.98

5 10 0.00083 0.065 13.3 0.1 3 23 498 519 496 519 0.93

6 10 0.11 8.9 6.6 1.8 1 23 526 549 526 549 0.98

7 10 4.6e-06 0.00036 20.4 0.8 1 23 553 575 553 575 0.97

8 10 0.00063 0.049 13.6 0.5 1 23 581 603 581 603 0.98

9 10 6e-06 0.00047 20.0 1.2 1 23 609 631 609 631 0.97

10 10 7.3e-07 5.7e-05 22.9 2.8 1 23 636 658 636 658 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.12	9.1	6.5	4.5	1	23	383	405	383	405	0.98
2	10	0.43	33	4.8	3.6	1	21	411	431	411	434	0.96
3	10	0.00014	0.011	15.7	0.6	2	19	441	458	440	462	0.89
4	10	1.6e-05	0.0012	18.7	3.1	1	23	468	490	468	490	0.98
5	10	0.00083	0.065	13.3	0.1	3	23	498	519	496	519	0.93
6	10	0.11	8.9	6.6	1.8	1	23	526	549	526	549	0.98
7	10	4.6e-06	0.00036	20.4	0.8	1	23	553	575	553	575	0.97
8	10	0.00063	0.049	13.6	0.5	1	23	581	603	581	603	0.98
9	10	6e-06	0.00047	20.0	1.2	1	23	609	631	609	631	0.97
10	10	7.3e-07	5.7e-05	22.9	2.8	1	23	636	658	636	658	0.96

Sequence Information

Coding Sequence: ATGGACGTGGAAGAGGGTGAGGCGAAAATGTGCAGGCTATGCGGCCAGTACGAGAAGATCTACATCGACATAGATGAGAAGGATCCTCTGCCCAAGGCGATCTGTGTTCAGTGTCTGGGCAAGCTCGAATTCGTTTGTGACTTCCAAGAGGAGTGTCGGCGCACCCAACAGGTGTTACGCGATCAGTACAATCTACCACCGTTAACAGAGTCCACAGAGGTAAAGATTGAAGAATCAACATCGCCGGTGGGCACGTCGTCGTCGGATAATAACAACAGTATTGAAAAGAATCTTAATTCCACCGGAAGCAGTCAAGCTGAGGAGAACCATGTTGAAGTAGTCAAGGATTTGGAACAgccgaaaaagagaaatacgtCTCCGAAGATTTTGAGAAGCCTTCGCAgtcagcaacagcagcaacaggtTTCCAAGTGCAACGATAAAGCCGCAGAAAAAAATGCGCAGACTCAGAGTACAGAAACATCGCTGACTCGTTGGCTCAGAAGCAGGCAAAGCGCGGATTCGTCTGTAGTGGACCTCGAGGAGATTCCGATCGCAAGTCGATTAAGGAGTCACAACAATAACGTCGAAAATAACATCAGTACACGTTCTGCGAACAACAACAATATTAGCAACAACGAGAGTACGGACAAACAGAGCAACAGTCCGAAGCAACAGCACCTGGATTCATCAGCGACGATTCAGTTCCCAACCTCagctttgaataaattattgacgATTGTTTCTAGCTCTCCCGATATCGAGGTCTCGGTAAAGGAGACGAGAAATCGGAATAATGACGCCGAGGATATTAGCTTCACCGTCGAGCTGTGCAAGAAGCAAAACGATGAGGTGTCGTCGGCGCGAGCGCGGGTCTTGCCCGATCAGGACTATTGTCTAGTCGACACGGCGATCGTGGATCTGCTGCAGAGCGAAAACAGCGCGGAGGTGAACGGCATTGTCAACACCATCCTTAGCAGTACGTCGCCGAAGAACAGCAGCGCGGCGgcaaagttgaaaaatttagcGGAGTTGGAGCAACGGTTAGAAGCCACGCAGAACCCAGAGGACCTTTTTAAGATCGACGGCGAGGAGATTAAGGTGGACGATAACGTGGAGCACGTTGTAAATGAAACGCAAAACGGTTACGCGTGTAAGCTCTGCCGAAAGTTCTACGAGCGCCGAGACAAATGTACGGTTCACGTGAAAACGCATCTCGGTATCAAGCAGTATACGTGCGTTGTCTGCAACGCCAAGTTTGTTTGCAAGTCTGACGTGATGAAACACATCCGATGCTCGCATACCAATCCTAGGCCCATACAATGTCCCAAGTGTCCTAAACGATTCAAATCCAAATTCTACCTGGCCGAACACGACAATGTTCACAAAGGTGTGCGGCCGTACAGTTGCGCGGACTGTGGGCAGAGTTATCACCACAAGGTTTCGTTGCAGATCCACATGAAGTCGCATCTGCCGCCGCAAAATCTGGCCTGCGAATATTGCGGCAAAGTCTTCCCATTTCGCACGAGATTGCTCGGCCATATCGCGAGTGTTCATATGAAAAAACGGCGCAATTTCCGCTGTCGCTTCTGTTATAATCTTTACTCGAGTCTGTCGGTGCTGAACGAGCATATCAAAACTCGCCACGCGACCACGTACACGTGCGAGACATGTGGCAAGACCTTCAAAGTCGCTTCCAAATACAAGGCGCACGTGCTGCAGCACTCCAATCCCAAGCCGTTTGTGTGCAACGTTTGCAACAACCGTTATGCGTCTAAAGCGTTTCTAAACGAGCACCTGTTGAAGCACGAGGGTTTGCGTAAACACGTGTGCCAAGAGTGCGGCGCGAGTTTCGCACAGGCGAGTCATTTGGCCGCTCATCGTCATGTACATGGGGAAAAGACGCACGCGTGCCCGGAATGCGGTAAAAAGTTCAATCGTCGCGACAACATGAAGGTGCATCGAAAACGGCATTTCGACGAGAAGAAGCCTAGCGCGACTGGCAAACAGAAGGTTACATCCAACAATAACAACCTGACTGCCTTTACCACGTCCGTTAACGAGAAATAA
Protein Sequence: MDVEEGEAKMCRLCGQYEKIYIDIDEKDPLPKAICVQCLGKLEFVCDFQEECRRTQQVLRDQYNLPPLTESTEVKIEESTSPVGTSSSDNNNSIEKNLNSTGSSQAEENHVEVVKDLEQPKKRNTSPKILRSLRSQQQQQQVSKCNDKAAEKNAQTQSTETSLTRWLRSRQSADSSVVDLEEIPIASRLRSHNNNVENNISTRSANNNNISNNESTDKQSNSPKQQHLDSSATIQFPTSALNKLLTIVSSSPDIEVSVKETRNRNNDAEDISFTVELCKKQNDEVSSARARVLPDQDYCLVDTAIVDLLQSENSAEVNGIVNTILSSTSPKNSSAAAKLKNLAELEQRLEATQNPEDLFKIDGEEIKVDDNVEHVVNETQNGYACKLCRKFYERRDKCTVHVKTHLGIKQYTCVVCNAKFVCKSDVMKHIRCSHTNPRPIQCPKCPKRFKSKFYLAEHDNVHKGVRPYSCADCGQSYHHKVSLQIHMKSHLPPQNLACEYCGKVFPFRTRLLGHIASVHMKKRRNFRCRFCYNLYSSLSVLNEHIKTRHATTYTCETCGKTFKVASKYKAHVLQHSNPKPFVCNVCNNRYASKAFLNEHLLKHEGLRKHVCQECGASFAQASHLAAHRHVHGEKTHACPECGKKFNRRDNMKVHRKRHFDEKKPSATGKQKVTSNNNNLTAFTTSVNEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01523594;
90% Identity: iTF_00765897;
80% Identity: -