Tame009875.1
Basic Information
- Insect
- Temnothorax americanus
- Gene Symbol
- -
- Assembly
- GCA_030770215.1
- Location
- JASTWO010000104.1:367292-379861[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.26 1.3e+03 0.7 0.0 6 15 51 60 46 72 0.75 2 3 6.2e-13 3.2e-09 38.0 8.2 4 67 150 212 147 215 0.91 3 3 8 4.1e+04 -4.6 1.3 5 11 366 372 364 373 0.59
Sequence Information
- Coding Sequence
- ATGACGCCCTGGGCGGCATACGCGAACGTATTTTCTCAAGATTTGCATCGAGAAGGCATCATGCCCGGGGCCTGGCCCGAGTTGTCGTCTTTGTGCCACAATGCGATTAAGGGCCGGTTATTTCAACTTGTTCGTAAATCATATGTTGCAACCTGGTGCCCAATATGTGATAAGCAAGTAAGCATCGAGGAACGAGACACGTACAGACTTCTCATACATATCCATAAATATCATCTCGAGATCGTTGGCAAATGTTTGAACAATCATCAGAAAACAGCGCGCTTTTGTAAATCACAAAGGGCGGAATGCAAGCGGAGCGGGCCGTCGCAGAGTGGCATGCTGCTCCCGTGGGTTCCAACACTGAAAGCGCCCGATGGTAAAACTCGCGCGCCGAAACGGCCGAACAATGTTTTCTCCACGGAAGTTGAAATATGGAAATACCACGATGAATCGATTCGTTGTCCGGCATGTGGCGTGAAGGACGTGCCGATAATACTAAAACAGCAGAAATTTATGAGCTCCCGATTGGCTGCATTTTGCTTAATGGGATGTTGGCCCTTCTGTTTTATACCATTGATGATGAGACGAGACAAAAGCGTGCGCACGCTGTGCCCGTGTTGCGGCCACGATTACGGAATTTGCACGGGAGCGGAGAGCAAGCTGATCGCCTGTTCGCCCGAATGCGCGTCTAGCCGCGGGAAATTAAGTGATTTCGCAAATTCACGAACGTGTCATCTTCGGGCGAAGTGCGGTGGCTCGCGAATGGAACCGGGACGTCGTCAGAAAACACTTTCCATGGGTGACGAGGCTGCGAGGACTCTCAGGGTCCCGGAGGAGCGTCCTCGGCGAGAAGAAGGCGAATCTCGTCGCTGCCGGTCGCAATCGAAGCTATCGCGCGGATACGCCTTTTGTGCGAACCAGGTCACGAATCGTGGTTCACCATATGACGAGTATAGCAGCGACGATCACGTGGACGACAAAAGATGGGATCGTCGGCGCGACTTGGACAAATCGAGAGCTTCGAAAGCTCGGGAACAAAGCGAATCCGAAGGCAGCAGCGGCGCGGGGACGGCGACGGGCGATTTTTATGCGAGACAGGTTTGCTGTCGGGAGTGCGGCTAG
- Protein Sequence
- MTPWAAYANVFSQDLHREGIMPGAWPELSSLCHNAIKGRLFQLVRKSYVATWCPICDKQVSIEERDTYRLLIHIHKYHLEIVGKCLNNHQKTARFCKSQRAECKRSGPSQSGMLLPWVPTLKAPDGKTRAPKRPNNVFSTEVEIWKYHDESIRCPACGVKDVPIILKQQKFMSSRLAAFCLMGCWPFCFIPLMMRRDKSVRTLCPCCGHDYGICTGAESKLIACSPECASSRGKLSDFANSRTCHLRAKCGGSRMEPGRRQKTLSMGDEAARTLRVPEERPRREEGESRRCRSQSKLSRGYAFCANQVTNRGSPYDEYSSDDHVDDKRWDRRRDLDKSRASKAREQSESEGSSGAGTATGDFYARQVCCRECG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -