Tame013450.1
Basic Information
- Insect
- Temnothorax americanus
- Gene Symbol
- -
- Assembly
- GCA_030770215.1
- Location
- JASTWO010000149.1:631367-634866[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.5e-05 0.0054 18.2 0.4 2 23 310 331 309 331 0.97 2 11 5.1e-05 0.0079 17.7 1.2 1 23 338 361 338 361 0.98 3 11 0.00093 0.14 13.8 2.3 1 23 403 425 403 425 0.98 4 11 7e-07 0.00011 23.6 1.5 2 23 479 500 478 500 0.97 5 11 3.2e-05 0.005 18.3 1.3 1 23 505 528 505 528 0.95 6 11 0.00013 0.019 16.5 0.2 1 23 566 588 566 588 0.97 7 11 1.2e-06 0.00019 22.8 1.7 1 23 598 620 598 620 0.96 8 11 5.8e-06 0.0009 20.7 1.8 1 23 626 648 626 648 0.99 9 11 1.4e-05 0.0021 19.5 0.2 1 23 654 676 654 676 0.98 10 11 5.6e-05 0.0087 17.6 4.5 1 23 682 704 682 704 0.98 11 11 0.0016 0.24 13.0 0.5 1 21 710 730 710 731 0.94
Sequence Information
- Coding Sequence
- ATGGCAGTCCCGAGCGATGACGCGATGGTGAATAGCACGGTACGCGCGGAACGGCTCGTGGGCAACGAGTGCCGTATCTGCCTCAAGCCCTGCACGGAGGTGTGCCAGCTCTTTCGCGACGATGGCGGAATACCGGAGAAACTGATGGCCATTGCCGCCGTGCAGGTGGAGGAGGGGGACGGTCTGCCAGCTTACATCTGTTTGTCCTGCAATCATCTGCTCGACGTGTCCTACGACTTCAGATGCCAGATTCAGAATTCCGACATCAGGCTACGTCAGATCCTCAAGTCGCAGGTTCAACCTATGTTGCGCGAGAAACATACGAAAGACATGAAGACCATGATGAAAGATATCACGGACGCCGTATCCGACGTGATGTCTTACAAGAAAGATGATCATGTCATAGAGCAGGACATTTACGCGTCTCACGATATCGTTACGTTCGACAGTACTGCCGTTCAGTCCGATTCGGCGATCAACGATGAATCTCACATGAGTCACAAGTTCGTGCAAAAGACGGAGGAAATTGTCGAACCGAGTGAAAAAGATTCGTCATACGATACATTTAAAGAGAACGTAGATAGTGCTGAAATGATGGAAATAGCTTTGTGTCACGAGGCAAACGTGGACGATGCGGCTGCCGATCATTCGGATCGATTGTCCAGTTCAACGACGGAAGACAGATGCATCAAGCAGGAGCAGTTGCTGCTACCTGAAGACAACGAGACGTCGGGGAGTTTAACGGACGAGAATCGGGAAGATTCATTGAAGATTGAAGTTAAGAATGACGTATTATTGGAGGACTTCAACGACCACGAAGTTTCGAGGGAGATCGCGGTATTGAGAACGGACAATCGGGATACGAGGGGCGTCGCTAACTGCAGCGACGACGAGGAGAAGCCACTCATAAGCAGGACGACCAGGCAGAAGTGCGCGTATTGCATCAAGTCGTTCGCGACGAAGGTGGCGTTGCAGCGACACATGAACGTGCACAAGCACACGAAGCTGCGCTACGTGTGCGTCGTGTGCGACAAGCAGTTCTCCAACATCGACAAATTGAAGGGCCACATGCTCACGTGTCACGAGGGTCAGACTACGGACGGTAAAGCGTCGCAGGATGACAGGAGGATGAGCAAAGTTACGGCGAAAGTCACCAGAAGCGGCAATCTGACGGACAGCGCGCgggaggagaagaaaaacTTCAAGTTCACGTGTAAAGTCTGCTCGaagcaatttatatatcagaAGTCCTTTGTGTCTCACGCCAAAAGCCATGCCGAATACGATATGGAAGTGAACGACGTGCTCGATCAGTTCACGAGTAAGACGACGGACGAGCAGAAGGATAGGATGCCGACGTTCAAGGAAAACGAATccgaggaggaagaggaagaggaggacgacgacgacagcgACTTGCCGATCGAAAGTCTACAGTGTACTCAGTGCGGCAAGCTTTTCGCCACGAAGAGGAACCTGAAGAGGCACATCTCGACGCACAGCGGCTTGAAGTTCAATTGTTCGACATGCGGCAAAGGATTTTCGAGGCTTGACAAGCTGAAGGATCACGAACAGTCGAAGCACAAAGAGGAAATATTTGGCAATACTGACGACGAGGACGATGACGAGGAGGATAACGAGAGCAAAATCAACGAGAATTCCGAGAACCGAAAGAAGGACCGACACAACAGGCCACACAAGTGCGCGCTCTGTCCAAAGGCGTTCGCGCAGGCTCAATCCCTGGCAAACCACGTAGAGAGGCATAAACGGGTGAAGGATACGCAAAAGCGGTTCCTCTGCGAAAAGTGTAGCAAGTGCTTTGCTCAGAGTGGCTCGCTGGTGGCGCATATGCGCACGCACACCGGCATCAAGCCGTACGTATGCAACACGTGCAGTCGCGCCTTTACCAAAAGCACGTACCTGCAGCTGCACCTGAGAACTCACAGCGGTGAGAAACCGTATATCTGTCAGTACTGTAGTAGGGCGTTTGCTCGGGCCAACACTCTGGCGCGGCACATCACCATGCACACCGGTGAGGCCAAATATCATTGCAACATCTGCACCAAGTCTTTCCGACGACTGACCTCGCTGAACGAGCACACGTATACGCACACCGGCCAACGACCGTACGCGTGCAAACTCTGCACGAAGAGGTACAACAACGCCGGCTCATTATATGCTCACACGAAAAAGTGCAAGGCGCAGCAGTTGTCCAGCTCGACCACGACCACGTACGCGGTGTCCACGGCGGACAATGCGCCGCAGCAGAACGACACGACCATGCCCCAACTGCTGATTTATTCCCAGAGGAAGCTGGTGGAAGAGGCGACTATTGGTCAAGTCGTATCCACGCCGCAATACATGGTAACAAATGTGCATAATCAAAAAACTGTGCCCGCGACAGTGCCCGCCAACGTGATTCAGCCCTTCACCGTAGAGGACCcgaatgtatataattcaaaGCAGTTTAAGAACTCGTATTACGCTATTTATccaaataacatataa
- Protein Sequence
- MAVPSDDAMVNSTVRAERLVGNECRICLKPCTEVCQLFRDDGGIPEKLMAIAAVQVEEGDGLPAYICLSCNHLLDVSYDFRCQIQNSDIRLRQILKSQVQPMLREKHTKDMKTMMKDITDAVSDVMSYKKDDHVIEQDIYASHDIVTFDSTAVQSDSAINDESHMSHKFVQKTEEIVEPSEKDSSYDTFKENVDSAEMMEIALCHEANVDDAAADHSDRLSSSTTEDRCIKQEQLLLPEDNETSGSLTDENREDSLKIEVKNDVLLEDFNDHEVSREIAVLRTDNRDTRGVANCSDDEEKPLISRTTRQKCAYCIKSFATKVALQRHMNVHKHTKLRYVCVVCDKQFSNIDKLKGHMLTCHEGQTTDGKASQDDRRMSKVTAKVTRSGNLTDSAREEKKNFKFTCKVCSKQFIYQKSFVSHAKSHAEYDMEVNDVLDQFTSKTTDEQKDRMPTFKENESEEEEEEEDDDDSDLPIESLQCTQCGKLFATKRNLKRHISTHSGLKFNCSTCGKGFSRLDKLKDHEQSKHKEEIFGNTDDEDDDEEDNESKINENSENRKKDRHNRPHKCALCPKAFAQAQSLANHVERHKRVKDTQKRFLCEKCSKCFAQSGSLVAHMRTHTGIKPYVCNTCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCNICTKSFRRLTSLNEHTYTHTGQRPYACKLCTKRYNNAGSLYAHTKKCKAQQLSSSTTTTYAVSTADNAPQQNDTTMPQLLIYSQRKLVEEATIGQVVSTPQYMVTNVHNQKTVPATVPANVIQPFTVEDPNVYNSKQFKNSYYAIYPNNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01476429;
- 90% Identity
- iTF_01406734;
- 80% Identity
- -