Tame000083.1
Basic Information
- Insect
- Temnothorax americanus
- Gene Symbol
- -
- Assembly
- GCA_030770215.1
- Location
- JASTWO010000001.1:766548-776173[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 1.2e-05 0.0018 19.7 1.1 1 23 255 277 255 277 0.98 2 31 0.012 1.9 10.2 3.7 1 23 300 323 300 323 0.96 3 31 0.00082 0.13 13.9 0.5 2 23 330 352 329 352 0.96 4 31 0.0039 0.6 11.8 0.1 1 21 372 392 372 393 0.95 5 31 0.011 1.7 10.4 0.1 2 23 491 512 490 512 0.95 6 31 0.078 12 7.7 0.4 2 23 519 541 518 541 0.88 7 31 0.00025 0.039 15.5 0.2 1 23 612 635 612 635 0.96 8 31 0.072 11 7.8 2.9 1 23 641 664 641 664 0.95 9 31 0.16 25 6.7 1.5 1 23 677 699 677 699 0.97 10 31 4.7e-05 0.0072 17.9 0.9 3 23 744 765 743 765 0.96 11 31 8.2 1.3e+03 1.3 0.8 1 23 798 821 798 821 0.89 12 31 0.0063 0.97 11.1 0.8 2 23 828 851 827 851 0.94 13 31 1.2 1.9e+02 4.0 0.0 2 23 860 882 860 882 0.90 14 31 0.035 5.4 8.8 0.0 2 23 889 911 888 911 0.93 15 31 0.00012 0.019 16.6 3.2 1 23 919 941 919 941 0.97 16 31 0.024 3.7 9.3 0.8 2 23 978 1001 977 1001 0.94 17 31 0.00028 0.044 15.4 3.3 1 23 1004 1027 1004 1027 0.97 18 31 0.00093 0.14 13.8 0.1 2 23 1034 1056 1033 1056 0.95 19 31 0.0012 0.19 13.4 3.9 1 21 1083 1103 1083 1104 0.95 20 31 0.0036 0.56 11.9 1.8 2 23 1118 1139 1117 1140 0.93 21 31 0.48 75 5.2 1.1 1 23 1143 1166 1143 1166 0.94 22 31 0.036 5.5 8.8 2.1 2 23 1173 1196 1172 1196 0.90 23 31 4.1 6.3e+02 2.3 0.2 2 23 1204 1226 1204 1226 0.94 24 31 0.87 1.3e+02 4.4 0.0 2 23 1233 1255 1232 1255 0.93 25 31 0.31 47 5.8 2.7 2 23 1264 1286 1264 1286 0.96 26 31 0.93 1.4e+02 4.3 0.5 2 23 1292 1314 1291 1314 0.91 27 31 0.023 3.5 9.4 0.1 1 23 1376 1399 1376 1399 0.95 28 31 0.00023 0.035 15.7 1.1 1 21 1426 1446 1426 1447 0.95 29 31 0.43 67 5.4 1.9 2 23 1550 1572 1549 1572 0.94 30 31 1.2 1.9e+02 3.9 0.4 2 23 1579 1601 1578 1601 0.94 31 31 1.3 2e+02 3.9 1.6 1 23 1612 1634 1612 1634 0.90
Sequence Information
- Coding Sequence
- ATGGCGACGATATCGATGActgcgacgacgacgatgacaacgtcgacgtcgacggcgacggcgacagCGATGGCGAACGAACCGAGGAAATCTTATCACGAGCTGTGTCGCCTGTGCGCCTCCTACGACGCAGTTAGGATGCACATATTCGGCCAGGAAGGCAAGAATCGCCAGCTCGTCGACAAGATCCAGACGTGCTTGCCGTTCAAGATAATTGAAGACGATTGTTTGCCAAAAGTCCTGTGTTATCGATGTATGTACAActtggaaaatttttatgacTTTCGGACTGCGTGTGTTAACGCAGCTGCTTGGTTGGAAAGAAATAGGCCGAAGGAAGGCGCGAGTGACGATGGCGCAAATGACGGCGCACAATTCGGCGAGGTGCACGCGGAGCTTCTTAAAGGGAAGGAAAATATGCCGGTACTTATTCCGGAGGCACCTGTGGTCAATCCTAATGCGGCATTAGGTACACCACCGAGATTAAATTCGGATGGCGAAGCGGATCCCGAGATCGAAGAGATTCTCGACACGAGTGAAGGTACGGATGAAGCTACAGTAATCGACGATTCGGAAGATCGACGATCGGAATACGAGATGGCGTACGAGATGGATATGGAGACGAATCCTAGCGACTTTTTGGAAATGACCCCAATGGTAACCGAGGAAAATGAAGAGGAGTGCGGTACGAACAACCCGAGTGCCGCGAATACTCAAGATACCGCGGTCTTTTCACATACGCAGCCGCAAAAACATGAAGTCTTCGTCTGTTCCCTATGCAACAAAGCGTTCAGTTCCAAGGGTCACTTGTCTCTGCACGCGAGAATTCACGTGGGTGAGGGTGATGTGATCGGCGAAAGAGTGATCACCGATGACCATACTTCGTACCAACGACCGTATCAATGTGATCTTTGTCATAAATCGTATTCTACTGCGAAACATCGCTGGGGGCACGTTTCTACGACACATcgAGGACATCCTGCGGTAACGTGTGCGTACTGTTCTCGCATATACTCGACGCGATATAATCTCGATGAGCATATAAAATCACGACACGCTGGTCTACCGCCACCTCCGGAATTATCAGTCTCCCTTTCGCGCACAGAAACTCGTTATCAGTGCCAAACATGTCCAATGGTGTATACGGATTTAGCAGATTTCAATGCGCATCGGCAGATATGCGCACAGGAACAACGTACGGATCTGTTGGGACAAACCGAAGCGCAGAACAATAAGATTTTCGCCGACACGTCCGATTTCTCGAGTATATATTCGGACGACGAGAACAAAGACTTCAGGAACGCCGAGGCTAAATTGGCGAAAAATCCGCAATTAACTATATTGAAACAAGCGCTGACTAAAGGAGACAGTCTAAAACGAAATTTTGACGACGATGGGTCGACATCCAGCAGCAAGCCGAAAAAAATAGTTAAGTCAGAGGAGGGCGAGACGAGTCCTCGGAAGAAGTGGTATTGTGAAGCTTGTCCACAAAGTTTTACATCGGTGGACAGTTTGAAGGAGCACGAGATTAGGCACGATGCCGAGAAACCATTTATTTGCATACTGTGCAAGAGAGATTTTGTTTTGAAATCTTCATTGATTAGGCACATTACATTGTCACATGGCGTTGATCCTACTCCCATCATTGACAGTGATAAGTGTTTAAAAACAACGGTGATGCCTCAAAATTGGAATGATCGAGTGGACGTCAGTGTTTATGAGCAAAGTGAAACGAAAGAACCACCAGAGCTCTCGTCGTCACCTGagataaatttagaaaatgatGACAAAGATTGTAAGAACAATCACGAGAATATAGAAATCGAAACGGTATTTGTATGTGAGACCTGTAAGAGAGACTTCAATGACCGAGCGTCATTATGGCTACACATACGAGCGATGCATAAAGAGTACGCTGCATTTACCTGTGGAGTGTGTTTAAAGATGTGCTTTAATAATACGCAACTTCAAAATCATGTCTATATGTATCACGGAAAGTCTAAGCTTTTAATATCGGAACAAAGAAGGTACAGTTGTACGATATGCGGTAGACAGCATGACTCGAGAAAGAAGCTAATCACTCATGTCTCGATACATAATGTCGATCCTGCCTTTGATCCTGCGaattttgtacaattaaatagtaattattataatgaaaactTGAATGGTAACGAAGGAAATGAACAAGCATTAGATTTTGACGGAGAAGATGGCGAGAAGGTCGATTGTTACATTTGTTATAAATCTTTTCCGACTGAGGATCATCTTATACGACATCAGAGAAATGCTCATAAGTCTGACCAGATAGTTTCATTAGGAGAAGCTGCGGGTAGTGGAAATACTCTTAGTGTCAATGGTAATGGCAACAGGGCGCagtatcatttattttttgtttgcgAAGTATGCGGTAGCTCACATTCGAGCAAATGGAAACGCTGGTTGCATATCAACAATACGCACAACAACGAATCTTCTATTAAATGCGAATGGGAAAATTGCGGAAAGATATTCGCGACGAAGTCGTTGCGCAACGAGCATCTCCAGCATCATGCGGTACAAGGACCCTCGCCTAACACTTGCGAGATATGTGGGAAATTGTGGCCTACTCGCGTCGATTATTGGAAACATGTGATGGGCGTGCACGCGGACACCGTGCCTCTAATTTGCGGCGTTTGTCTGAAAGTATTTTCCGACGTTATGCAATTAAGCGCACATGTCAAGGCGAAACATTGGCCACTAACCAGTGGTGATTTCTGTTGTGATATTTGCGGTAGACCGTACTCCAATAAATCAAAGATGTCTCGGCATAGAAAGATCCATGGGTTGGAAGCGGCTATGGACGCCGCATGCGATAATAGCAGTTTCAATGAAACGACCAATGAATCGGTTAAGCCTGATCACAACAATGGCGCTTCGGAAATAGAATTAAGTTGCGAGCAGTGCCCTGAACTCAGCTTCACGACATTGGACAGTTTGTGTAATCATCGACGGATAGCACATGGTCTTTTCCCGTGCGACTTGTGTAACAAATGCTACGGCAGAACGTCGCACTTGTGGAAGCATGTGAATAGAGTGCATAAAGGACACGCGGATGTGACTTGTCCTTACTGCGCAAAGACAAGCGCGTCAAGGGATCATCTGGCAGCACATATTGCCAAGATTCACAGGTACATGCCCGCAATGGGTAAGGGTAATCAGAACTGCGTCGCTTCCAAGTCCCTGAGTGTAGACGACGGTGTCTTGCATTATTGCGAGAAATGTAACAAGGGATTCCACAAGCGCTATTTGCTCCGTCGTCACATGAAAGGCTGTCAAAACTATCGTAAAGATCCTGGTGCATTGTTAACTCGTTGTCGGGCCTGCGAGAGGATATTCAAGGATCGTGCGAGTCTACAAAAACACATTGAGAATCATCACAGCACGTACACTTGCCATTTGTGTAACGAAACGATCACTTCCAAGCTAGGTATCATGACACACAACCGCGTCAATCATATGGATCACCCGGATCTGACGTGCGACCATCCAAGTTGTAAAAAACTCTTTCGGACTAAAGAAGATCTGGAATCTCATCGAAAGGATCACAAGTATCACAACAATCCGAACGTTTGTGATTTTTGCGGTGACACCGTGGAAAATAAGCTGAAACTGAAAATGCACGTATTATCGTTGCATCGAAACGAGATCGGAGTATCCTGTGGTGTCTGCCTCATTCCGATGAAGGACCCCAAAGATTTGAAGAAGCACGTGGAAACCGAGCACAGCAGCGTTCTTTCTAATCCAAACACGTGTCAGGTATGTGGCAAGCAATATGCATCCAAGTGGAAGGCTTTCGATCACACGAAGAAATGTCACGGCAAGGTTTTCCTCACGTGCAAACAGTGTCTAGCGGTTTTCACGGATGAAAACGATATACGCGATCATTACGAGCATGTGCATAACGTTCCGAAGGACCAATTAGCCATTTTCGAATATAGAATGGATATTGGTGTAAAGAGAGAGGGTTACGAGACTCCCGATATTATTGTGAAGGAGGAACCGGATGACTTGGAGTTCGACGAGGAAATGTGTGACGAGAGTTCGAACGACTCTCGCAAACGTGGAAGATCGCCAAACGACACATACGATTGCGAGATGTGTCCCGAGATCTTTCTCAATTCGGACACTCTTGCCAAACATTATCAGAACGTCCATAACACCGATCCCATCCGTATGTTCAAGAAATTCAAAAAAGATAGCGATAGCAAGCGCaaaatgaaaaacaaaaacaactTCGAATGCAAGAATTGCAAAAAGCAGTTCTCCACCAAGACCTTATTTTGGAATCACATCAATGTATGTACACGGCGAAACTCGATAGGTAAATTTGACATCCCAAATAATGTCCCGACATCAATTCTGGAGTCTCATCTGAAACAAAACAATCAGATTCAACGAGAAGAACTGTCGCTACCACCGACGAACGAATCCAACTTGAACATTCCCGACTTCAATCTATTCgaagatattaatttgcaattgTCGGCTCAGAAACCTGTGCCGAATCTTATGCCATTGTCGCAGATGAAAACGACAGGTAACAACGGCAAATGCTCGAGAAAAGACTCGCGCAAGGTGTATGACGAATCGACCAATACTGAGTGCACGTGCGAAGTCTGTGGTAAGCAATGGCCCGCCAAAAAACATTTGTGGCAACATCTGATTCGTTTCCATCGCGCCGAAGCTGCCGTTACGTGTGGCGTATGCTTGAAGCTGTGTAAATCTTATCAAGATCTGGCCGACCACTTGAAGGCCGAGCATGCTCCTGTTTTGTCGCCGGAGGGCAACAATTTCACTTGTAAGATATGCGGTAGGTACCACAACGCGAGAAGCAAATTGAACTTGCACACGGGCATCCATATTGGGAACCACCAGTGTCAAAAGTGCCTGCAATTTTTGGAGAGCGAGGAAAAACTCACCGAGCATACAACGAGCTGCAATGGCAAATCTGAGTTTGAAGATCACGCAGTGGCGGACGAAGATAACGCGAAAAACGATAACGACGAAAAGGGTAGTTTAATCGCCGACGAGACGTCGGTCATTGAGGGAGCGGAGGAAGCAGAGGAAGCGGATTTCGAATCGGAAGGCGAAGAAAATTCGGAAAATAGCGAAGAAGACAATTCGGAAGATAGCGATGATTCGGATAGTGATAGTAATAGTAGTTCGAGCGAAGACGAGAACGAGAACGAAGatggagaggaagaggaggaggaagaagaaaatgaaaacgaTAATGAGTCTGATACAAGATCCACTAGTCGAGAGAGCGGTGATAGTGTATCGTGTAATTCCGATAGCGACGACGAATCGGATATGGATGACACGGAAGTGAACGCGACGGAAAATAAAGCGCTGCAATTGAGCGATATCGGTAGATTCAGGATACGCGGTGACGATATTCAAGATAATATGCCGATGGAGAAGAATTTCAAGGATCAGAAAACCTATCTTACGTCCGTTACCTCAGCGACGGTTGCAGAACAAACTGGACAAAGTAATTTGAACGATCTGTTGATTTCCAATGCACCTGCGAACATGGACAAATTTGAAGCATTTCGTCTCGAGGAATCCGCTAAAGCTGCGGCGAACGATGTAGACTTGTCTGTGTCGGACGATAACGAAGACGATGAGGAAAATAATGATGAAAACGAGGAAGAAGATGGTGAAGTTGGTGGCGAAGATGAAGACGAGGATGAAGGTGAGGCTGAGACTGACAATGAGACTGAGGCCGATGAAAGTGAAAATGAGGACGAAGccgagaaagaggaagaagaggaggaagaggaggaggaaaatgAAGatgacgaagacgacgacgacgacgacgtcggaCCGCCTGTATTAAGTCCAATAATGCCTTTGTTACCAGAAAATGAATCTGAGGAGCACAGCGGCACGGCAGATCGCACGAGGCACAAGCTCAGTCCGATGGTTTCGCTGAGTATTACTAAAGAGGAGTGTGATCTGGAGGAGTGTGAAATAACCGAAATGCCAAATGATGTGGAGAACGTATCCAACGCAGCCAACCTCTTCGCGGCTAATAACAACGATCTGCCCGTAACGTGGGACGAGAACTTGGATGATAACGGAATCGACAATGGCGATTGCAACTCCGACATTGGAGACAGGGATATGGAGAAAAACGAGGAATTCACTAAGGAGTATATCAAAATAGAAGTGAAGCAGAACGATGCTTTTGAAGAGAATTCCGTGAAAAACGAGGAGGAATTCAGTAAGGAGTATATCAAAATAGAAGTGAAGCAGAACGATGATTTTGAAGAGGATTCCGCGTATGAGAACGTAGTGGATAATAGTAGAGGTGATGGAGACAATCAAGTGCACGAGGTGCACAATCTGGACGGAGCCGTGCTAATGGTGACTACTAATGAGGGTAATCAGATTTTGATAGAACCAAACGTGTTGGATATCGTTAACGAGGACTCTAATGCCGAAGCAACGCAGTATATTTACCCAGGGAACGCTTACGAGATCGAGGAAGAGGATTATGCGACGCGAAATGAAACCGACGTCATGCAGACGGATGAGATGCAAGGCAGTATGTCCTACGTTCAAGATACATCGGAGAATGAGGATAGTACGGAGGTTGACATCGAGGAGTACAGCAGTGACGTGCAGAAACAGTAG
- Protein Sequence
- MATISMTATTTMTTSTSTATATAMANEPRKSYHELCRLCASYDAVRMHIFGQEGKNRQLVDKIQTCLPFKIIEDDCLPKVLCYRCMYNLENFYDFRTACVNAAAWLERNRPKEGASDDGANDGAQFGEVHAELLKGKENMPVLIPEAPVVNPNAALGTPPRLNSDGEADPEIEEILDTSEGTDEATVIDDSEDRRSEYEMAYEMDMETNPSDFLEMTPMVTEENEEECGTNNPSAANTQDTAVFSHTQPQKHEVFVCSLCNKAFSSKGHLSLHARIHVGEGDVIGERVITDDHTSYQRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRYNLDEHIKSRHAGLPPPPELSVSLSRTETRYQCQTCPMVYTDLADFNAHRQICAQEQRTDLLGQTEAQNNKIFADTSDFSSIYSDDENKDFRNAEAKLAKNPQLTILKQALTKGDSLKRNFDDDGSTSSSKPKKIVKSEEGETSPRKKWYCEACPQSFTSVDSLKEHEIRHDAEKPFICILCKRDFVLKSSLIRHITLSHGVDPTPIIDSDKCLKTTVMPQNWNDRVDVSVYEQSETKEPPELSSSPEINLENDDKDCKNNHENIEIETVFVCETCKRDFNDRASLWLHIRAMHKEYAAFTCGVCLKMCFNNTQLQNHVYMYHGKSKLLISEQRRYSCTICGRQHDSRKKLITHVSIHNVDPAFDPANFVQLNSNYYNENLNGNEGNEQALDFDGEDGEKVDCYICYKSFPTEDHLIRHQRNAHKSDQIVSLGEAAGSGNTLSVNGNGNRAQYHLFFVCEVCGSSHSSKWKRWLHINNTHNNESSIKCEWENCGKIFATKSLRNEHLQHHAVQGPSPNTCEICGKLWPTRVDYWKHVMGVHADTVPLICGVCLKVFSDVMQLSAHVKAKHWPLTSGDFCCDICGRPYSNKSKMSRHRKIHGLEAAMDAACDNSSFNETTNESVKPDHNNGASEIELSCEQCPELSFTTLDSLCNHRRIAHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHADVTCPYCAKTSASRDHLAAHIAKIHRYMPAMGKGNQNCVASKSLSVDDGVLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVNHMDHPDLTCDHPSCKKLFRTKEDLESHRKDHKYHNNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVETEHSSVLSNPNTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTDENDIRDHYEHVHNVPKDQLAIFEYRMDIGVKREGYETPDIIVKEEPDDLEFDEEMCDESSNDSRKRGRSPNDTYDCEMCPEIFLNSDTLAKHYQNVHNTDPIRMFKKFKKDSDSKRKMKNKNNFECKNCKKQFSTKTLFWNHINVCTRRNSIGKFDIPNNVPTSILESHLKQNNQIQREELSLPPTNESNLNIPDFNLFEDINLQLSAQKPVPNLMPLSQMKTTGNNGKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYQDLADHLKAEHAPVLSPEGNNFTCKICGRYHNARSKLNLHTGIHIGNHQCQKCLQFLESEEKLTEHTTSCNGKSEFEDHAVADEDNAKNDNDEKGSLIADETSVIEGAEEAEEADFESEGEENSENSEEDNSEDSDDSDSDSNSSSSEDENENEDGEEEEEEEENENDNESDTRSTSRESGDSVSCNSDSDDESDMDDTEVNATENKALQLSDIGRFRIRGDDIQDNMPMEKNFKDQKTYLTSVTSATVAEQTGQSNLNDLLISNAPANMDKFEAFRLEESAKAAANDVDLSVSDDNEDDEENNDENEEEDGEVGGEDEDEDEGEAETDNETEADESENEDEAEKEEEEEEEEEENEDDEDDDDDDVGPPVLSPIMPLLPENESEEHSGTADRTRHKLSPMVSLSITKEECDLEECEITEMPNDVENVSNAANLFAANNNDLPVTWDENLDDNGIDNGDCNSDIGDRDMEKNEEFTKEYIKIEVKQNDAFEENSVKNEEEFSKEYIKIEVKQNDDFEEDSAYENVVDNSRGDGDNQVHEVHNLDGAVLMVTTNEGNQILIEPNVLDIVNEDSNAEATQYIYPGNAYEIEEEDYATRNETDVMQTDEMQGSMSYVQDTSENEDSTEVDIEEYSSDVQKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01355612;
- 90% Identity
- iTF_01406732; iTF_01408471;
- 80% Identity
- -