Tocc058992.1
Basic Information
- Insect
- Teleogryllus occipitalis
- Gene Symbol
- Trl_2
- Assembly
- GCA_011170035.1
- Location
- BLKR01001438.1:84167-111057[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.1e-13 1.2e-07 34.9 0.0 17 44 71 98 64 102 0.93 2 4 1 1.6e+05 -5.5 2.6 13 24 149 160 145 162 0.77 3 4 1.6e-18 2.7e-13 52.9 0.0 19 49 259 289 256 292 0.94 4 4 0.92 1.5e+05 -3.9 0.5 19 34 310 325 301 326 0.74
Sequence Information
- Coding Sequence
- atggCTGGAGGTCGGAGCTTTCCTGCTCACAAGATTGTACTTTGTGCGGCCAGtccatttttattgaatttgttgaaGAGTACTCCATGCCAGCATCCTGTTGTTATGTTGGCGGGTGTCACTGCACCAGATCTGGAAGCTCTTCTGGAGTTTGTGTACCGGGCTGCCTTGCTGCCCACGCCAGGCAATGCTGTGTCAGGCGGGGGGAAGGTGCGAGGGGCCTCAGATCAACCAGGCATGTGTCCGCTATGTGGTGCAATGCTGCGCCAGGCCAGAAACCTGCGTCGTCATCTTCTCACGAGCTGTAAATACCGGATGATGGGGCTTACTGGCCCCGGAATGGCTGCTGTCTCTTCTGCATCTTCTGGTGTCATTTCTGCCTCACTTTCGCTTCCTTCGATATCCTCTAGTCCTCCTGTACCACCTCAAATTCCAACACACCAACAGACTCCAACGCACCAATCACAACAGCAGCAACCGCAGCAACAGCAAGCACACTCCTCCTCAGCAAGCCCAAGTCAGCCTCCGGGGCCGGCATGTGAACACATTGTATGCAAAGTATCACCATTGCCGTCTCCCATTTTTCCGCCGCTACCCCTCTACTCCATAGGGGAGAGGTGGCTGCCCCGCCTAGCTGCCTCTTCCCCTCCCGCGTCgtcggctggcggcggcggcgtgggcgtggacggCGCGTCGGTTGGGACGTCCTCGTCCGGCGGCGCTGGCAAgaagagcggcggcgggggcggggccgcgggcggcggcgggggcagcagcgTGTCGGACCAGCCGGCCACGTGCCCGCTGTGCGGCGCCACGCTGCGCCAGTCGCGCAACCTGCGGCGCCACCTGGAGCTGCTGCACTTCGGCGTGGGCCGGTCCACGGTGCGCgtgcgctcgcgccgcgccgcctccgcccctcagccctcctcctcctccgcccccgcccccgcacccacggccctcgccgccatcgccgtccccaccgccccgcaccacctcttgcagcagcaccagcagcagcagcagcctcaGCAGgacgcgggcggcgcgccccTGGCGGGCACCCCGCACACTTCGCAGCCGACGGCAGGCCTGCCCCCGCCACCAGCCGACATGCAcagcccccctccgccgcctcctcagCCGCAGCAGCAGCCTCCGCCGGTGCAGTCGCAGCTGGTGCAGATGGTGCACCTGGCGCCGGCCGCGCTCGCCCCGCAGGCCGCCCAAGCGCACCTCATGGCGGCGCTGCCGCCGCACTGCCAGGCGCAGGTGCTGGCTCCGGTGCGGCGCCACGACGACTGCcatcaacagcaacagcagcaacccCACCAGCAGCACCCCGTCGcccaacagcaacaacagcagcagcagcaacagcagcacgTGCGTCTGGCGAGTGGGCGCCCGGAGGagctgggcggggccggggagcgcgcgggcgggggcgggggcggggccgggggcggcgtggTGTGCGAGCCGTCGCCCGTGCTGGGCTGCCTGCTGCCGCCCATGCCCTCCCCGCACGACGCGCTCTTCCGCCAGCACCACGCCGAACtgctgcggggggcggggctgtacgcggacgcgcgcccgccgcccccgcccccgccgcccgcgccgcccatggCCCCGcaaccgcagccgccgcccacgccccgcgcgcccgcgccctccgcggaCATGCGCCAGGAGGTGGCTTGA
- Protein Sequence
- MAGGRSFPAHKIVLCAASPFLLNLLKSTPCQHPVVMLAGVTAPDLEALLEFVYRAALLPTPGNAVSGGGKVRGASDQPGMCPLCGAMLRQARNLRRHLLTSCKYRMMGLTGPGMAAVSSASSGVISASLSLPSISSSPPVPPQIPTHQQTPTHQSQQQQPQQQQAHSSSASPSQPPGPACEHIVCKVSPLPSPIFPPLPLYSIGERWLPRLAASSPPASSAGGGGVGVDGASVGTSSSGGAGKKSGGGGGAAGGGGGSSVSDQPATCPLCGATLRQSRNLRRHLELLHFGVGRSTVRVRSRRAASAPQPSSSSAPAPAPTALAAIAVPTAPHHLLQQHQQQQQPQQDAGGAPLAGTPHTSQPTAGLPPPPADMHSPPPPPPQPQQQPPPVQSQLVQMVHLAPAALAPQAAQAHLMAALPPHCQAQVLAPVRRHDDCHQQQQQQPHQQHPVAQQQQQQQQQQQHVRLASGRPEELGGAGERAGGGGGGAGGGVVCEPSPVLGCLLPPMPSPHDALFRQHHAELLRGAGLYADARPPPPPPPPAPPMAPQPQPPPTPRAPAPSADMRQEVA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01404247;
- 90% Identity
- iTF_01404247;
- 80% Identity
- iTF_01404247;