Tluc025794.1
Basic Information
- Insect
- Teleiodes luculella
- Gene Symbol
- PRDM7
- Assembly
- GCA_948473455.1
- Location
- OX419609.1:8027508-8037391[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.33 8.8e+03 -2.5 0.2 27 45 268 286 264 308 0.61 2 11 0.014 3.8e+02 1.8 0.0 27 52 352 377 341 379 0.88 3 11 0.00078 21 5.9 0.0 23 52 376 405 370 407 0.86 4 11 0.042 1.1e+03 0.3 0.0 23 52 404 433 397 435 0.85 5 11 0.034 8.9e+02 0.7 0.1 23 52 432 461 422 463 0.83 6 11 0.032 8.5e+02 0.7 0.0 23 52 460 489 440 491 0.82 7 11 0.011 2.8e+02 2.3 0.1 23 52 488 517 481 519 0.85 8 11 0.00065 17 6.1 0.0 23 52 516 545 510 547 0.88 9 11 0.00078 21 5.9 0.0 23 52 572 601 565 603 0.88 10 11 0.0061 1.6e+02 3.0 0.0 23 52 600 629 593 630 0.86 11 11 0.0002 5.3 7.8 0.1 23 44 628 649 622 655 0.88
Sequence Information
- Coding Sequence
- ATGAAGGTTCCTTCGCCGACGGGTTTCTCAGACTTCGTGCCGCACGCCGCTCTGACCATTCCTCAGGAGTTTCTCCATCTCGCTCCCTCCAACATCCCAGGCGCGGGTATCGGAGTATTTTCCACGTTAACTTTGCCAAAAGGCGTACGTTTCGGTCCGTACCGCGGAGTGCGCACCAAAAATGTGGAGTCTGAATACTGCTGGCAGATATACTCGTCCCACACCGGCGGCCGCAAGCCCCTGCACGCGGTGGACGCGAGCGACGCCGCGCGCTCAAACTGGATGCGGTACGTCAACTGCTCGCGACACAACATCGAACAGAACCTCGTCGCGTACCAGTACCAGGGAGAGTTGTACTACAGAACCATTAAGCTGATCCCTCGTTTCTCGGAGTTGCTGGTGTTCTATGGGTCGGAGTATGCGAGGTCGCTGCGCATCGACATGAGGCTCTATAACAGGGTCGAGGGGCTAGAACGACTCATTGCTCCTGTGCCTGAAAAGCCGAAGTTGATAAATGGTGATTCAGAAAAGAAACAGTCTACGGCTGAAAATCAAGCTAACACTGAATCTGAAACTTTAAACACCAGCGTTACGAATGATGATATCGAAAATGTGCCACCTAAAGAAACTTGCAAAAAGATTCCGTTTGTCAACGATAAACAAGAGCAACCTGAGTTTAAAAATATCCCTAATCTTCCTCAAAATTCTAACACGGCTGTTCTAAACAATTCAAATGCTGAAATAAAAAAAGAACAGCCAAATAAAATTCAGGGTAACTTTTCAGTAACCAAAGCGCATTCATGTAATATTTGCGATTACAAAACTATTAAGATAAACGTATTACAAAAGCATTTGAAGGCACACTCTGCTTCAACGAAATTCACTTGTGATGTTTGTTCTTATATAGCAACCACTAGATGCAAAATAGTAGATCATTTAAACACGCACATTGGAAaaaaggtttatgtctgtgataaatgtgacgacaagttttctcagagtagttctctaacaacacatatgagaatacactccggcttaaaaacatatctatgtgatatatgtgacataaagttttctcagagtagtcatctaactacacatatgagaatacactccggcataaagccttatgtctgtgatatatgtgataaaaagttttctcagagtagtaatctaactacacataagagaatacactccggcataaagccatatgtctgtgatatatgtgacaaaaagttttctcacagtggtgctctaacagcacatatgagaatacactccggcataaagccatatgtctgtgatatatgtgacaaacagttttctcatagtagtgctctaaaaacacataagagaatacactccggcataaagccttatgtctgtgatatatgtgacaaaaagttttctcgtagttatactctaacaatacatatgagaatacactccggcataaagccttatgtctgtgatatatgtgacaaaaagttttcccacagtagtcatctaactagacataagagaatacactccggcataaagccatatatatgtgatatatgtgacaaaaagttttctcagagtagtgatctaactaaacatatgagaatacactccggcataaagccttatgtctgtgatatatgtgacaaaaagttttctgataatagtgctttagctggacataagagaatacactccggcataaagccatatgtctgtgatatatgtgacaaaaagttttctcagagtggtgatctaactaaacatatgagaatacactccggcataaagccatatgtctgtgatatatgtgacaaaaagttttctcagaatggtaatctaactttacatatgagaatacactccggcataaagccttatggctgtaatatatgtgataaaaagttttctcagagtagaaatctagctacacataagagaatacacactgaaaaaaGTCTTAAGCCTATGAGTGTACCTTCAAATTGA
- Protein Sequence
- MKVPSPTGFSDFVPHAALTIPQEFLHLAPSNIPGAGIGVFSTLTLPKGVRFGPYRGVRTKNVESEYCWQIYSSHTGGRKPLHAVDASDAARSNWMRYVNCSRHNIEQNLVAYQYQGELYYRTIKLIPRFSELLVFYGSEYARSLRIDMRLYNRVEGLERLIAPVPEKPKLINGDSEKKQSTAENQANTESETLNTSVTNDDIENVPPKETCKKIPFVNDKQEQPEFKNIPNLPQNSNTAVLNNSNAEIKKEQPNKIQGNFSVTKAHSCNICDYKTIKINVLQKHLKAHSASTKFTCDVCSYIATTRCKIVDHLNTHIGKKVYVCDKCDDKFSQSSSLTTHMRIHSGLKTYLCDICDIKFSQSSHLTTHMRIHSGIKPYVCDICDKKFSQSSNLTTHKRIHSGIKPYVCDICDKKFSHSGALTAHMRIHSGIKPYVCDICDKQFSHSSALKTHKRIHSGIKPYVCDICDKKFSRSYTLTIHMRIHSGIKPYVCDICDKKFSHSSHLTRHKRIHSGIKPYICDICDKKFSQSSDLTKHMRIHSGIKPYVCDICDKKFSDNSALAGHKRIHSGIKPYVCDICDKKFSQSGDLTKHMRIHSGIKPYVCDICDKKFSQNGNLTLHMRIHSGIKPYGCNICDKKFSQSRNLATHKRIHTEKSLKPMSVPSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01403661;
- 90% Identity
- iTF_01403661;
- 80% Identity
- iTF_01403661;