Timp000392.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Teinopalpus imperialis
Gene Symbol
-
Assembly
GCA_029286865.1
Location
JAGSMU010000001.1:9099500-9114461[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 8.2e-05 0.0091 17.2 0.1 3 23 150 170 149 170 0.97
2 17 7.5e-07 8.3e-05 23.7 1.2 1 23 176 198 176 198 0.99
3 17 4.6e-06 0.00052 21.2 2.7 1 23 204 226 204 226 0.99
4 17 3.2e-06 0.00035 21.7 2.6 1 23 241 263 241 263 0.98
5 17 6.5e-05 0.0072 17.6 2.6 1 23 278 300 278 300 0.98
6 17 2.9e-07 3.3e-05 24.9 1.5 1 23 315 337 315 337 0.99
7 17 0.00013 0.015 16.6 2.8 1 23 343 365 343 365 0.98
8 17 9.2e-06 0.001 20.2 2.1 1 23 371 393 371 393 0.99
9 17 0.03 3.3 9.2 1.8 1 23 400 422 400 422 0.98
10 17 5e-07 5.6e-05 24.2 2.3 1 23 428 450 428 450 0.99
11 17 0.035 3.8 9.0 1.8 1 23 457 479 457 479 0.98
12 17 2e-06 0.00022 22.3 1.5 1 23 485 507 485 507 0.99
13 17 0.00039 0.043 15.1 0.7 1 23 514 536 514 536 0.99
14 17 2.3e-06 0.00025 22.2 1.9 1 23 542 564 542 564 0.98
15 17 0.0016 0.18 13.1 0.3 1 20 570 589 570 592 0.93
16 17 5.4e-05 0.006 17.8 1.2 2 23 599 620 598 620 0.96
17 17 2.9e-06 0.00032 21.8 1.4 1 23 626 649 626 649 0.97

Sequence Information

Coding Sequence
ATGGCACGGGGCGTGGGGGTCCCCGTGCCACCCCCCGGCGACCTACTCGCCACTATCTCCATGTTTGAACAGCACATCAAAGCTGAACCTATgagTTTCTACACTTCCCACTCTCATATACACTCTGGTCCCCCTACAATAATCCGTTCTGACACACACCACGGTGTGTTAAATATGAACcagcatcatcatcatgaagACTCAAAAGATAGCCTAATAATACAACAACAAGTACAACATCAAGAGATGATGGAGCAACACCAGCAGCAACAAGAATTACAAGCACAAGATGATGAGttaagcTTCAAAGGAATGGACGATGAAGGAGTTGAAATGGACATGGATGGCCGACAATGTTCTCAGggCATGGTAATAGACATGGGTGCGGTTCAAACTAAAATTGAAGTTTCAAATGGGGGGCAACTACCGAGATCCAAACCACAAGCCTGTAAGgtTTGTGGGAAAGTGTTATCATCAGCATCTTCATATTACGTCCACATGAAGCTACACTCTGGAAACAAACCTTTTCAGTGCacgGTTTGCGACGCGGCTTTTTGTCGCAAGCCATACCTGGAGGTGCACATGCGCACGCACACGGGCGAGAGACCGTTCCAATGTGACCTATGTCTCAAGCGATTCACACAGAAGTCCAGTCTGAACACGCACAAACGAGTCCACACCGATGAGCACATTCGCGCGTTGTTGGTGAAGGAGCGGCCCTACAAGTGCGATCTCTGTCAGATGCGCTTCACCCAGAGCTCCAGCCTCAACAGACACAAGAAAATTCACACGGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACGTCTGTTTTATCCGCTTCACTCAGAAGTCCAGCCTGGGCCGTCACGGAAAGATACATACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAGTGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGCGAGCGGCCCTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGGCGAGCGGCCCTATCAGTGCGACGCCTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAACGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGCCCGTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCAAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAGGGTCGGCCGTTCCAGTGTCTGCAGTGCCCCGCCGCCTTTACCTGCAAGCAGTACCTCGAGATACACAACCGCACGCACACCGGCGAGCGGCCCTACCAGTGCGAAGTGTGCCTCAAGAGATTCGCTCAAAAAtctacactcaacatacacaAACGAACGCACACAGTGCAAGGGCGGCCGTATCAGTGTATGGAGTGTCCGGCCGCGTTCACTTGCAAGCCGTACCTGGAGATTCACATGCGCACGCACACCGGCGAGCGCCCGTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCAACACTCAACATTCACAAGCGAATTCACACCGGTGAACGTCCATATGCATGTGACATTTGTCAGAAACGGTTTGCTGTGAAAAGTTATGTAACAGCTCATAGGTGGTCGCACGTGGCCGACAAGCCGCTGAACTGCGATCGGTGCTCGATGACCTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCATGCACTCGGCCGCCTCCTGCTACGAGTGCAGCGTGTGCGGACGCACCTTCGTGCGCGACAGCTATCTCATACGACACCACAACCGTGTGCATAGAGAAAATCACAGCAACATATCTGCTAACAGCATCGGCACGATGACCAGCGTAGCAACAAACACGAACAACTCGAACAGCAACTTCGACTCGCCCGGCGTTTGTGACTTAAGTTTTGGGCCGATGGTAAATCGCTACATGACATCCCAGGGCACCCAAGTGTCCGTGCAAGACACGAGCAAAATGTCCGCCATGTCGCCCCAGTCTATCACTTCCATTTcatCGCCTCCTCCCCCCCACACACCAACCCCTCAGCCTCAGATGTCTGGTCAGATGGGGCTCACGGACTGA
Protein Sequence
MARGVGVPVPPPGDLLATISMFEQHIKAEPMSFYTSHSHIHSGPPTIIRSDTHHGVLNMNQHHHHEDSKDSLIIQQQVQHQEMMEQHQQQQELQAQDDELSFKGMDDEGVEMDMDGRQCSQGMVIDMGAVQTKIEVSNGGQLPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHIRALLVKERPYKCDLCQMRFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHVCFIRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCEVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRMHSAASCYECSVCGRTFVRDSYLIRHHNRVHRENHSNISANSIGTMTSVATNTNNSNSNFDSPGVCDLSFGPMVNRYMTSQGTQVSVQDTSKMSAMSPQSITSISSPPPPHTPTPQPQMSGQMGLTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_01115851;
80% Identity
-