Timp005587.2
Basic Information
- Insect
- Teinopalpus imperialis
- Gene Symbol
- -
- Assembly
- GCA_029286865.1
- Location
- JAGSMU010000009.1:12572694-12597439[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.6e-11 9.9e-08 32.4 0.0 2 39 172 210 171 214 0.88 2 4 5.5e-11 1.5e-07 31.8 0.1 3 39 227 263 225 266 0.92 3 4 1.1e-14 3.1e-11 43.6 0.1 4 45 283 325 280 325 0.96 4 4 1.2e-18 3.3e-15 56.3 0.0 1 44 332 376 332 377 0.96
Sequence Information
- Coding Sequence
- ATGCCCAGCTACGGACTGTTTCAAGTAAAATGCGAACCGCCATCAGACGAGGAAGACAGCAACTCACAATTCGCACACAACTTTCTGCCGAATCAGCTTACCACCTCGGAGCTGGTCACGGTTAAAGTGGAAGCTGTGGACCAGGCTGATGAGGATTCCGCGTCCAACATTTTGCATCACTTGCAGGTTGGGGGCGAGCTGGAGCTGACCCCGCCGGCGCCGGCTGCCCCAGCTGCCACGCCGGTACACGCGCGGCGGTGCCCACCTCCTCAGGCCTCGCCCGACAGCTTCGAGACCCTCGAGCCCGCCCGCTCCGCCACGGGTACCACACTCCTGGACAGGCATATGCAGTTACTGAATGCCAGTAATGTGGACCCTGACTTCGTCCCGCTGATGCCGGTTAAGGATGAGCCCTTGTCGGAGGGAGAACAACAACAGCTGAGTGATGACGCCAGCGAGAGCGGGGCCGCGTACGAGGCAGCGGAGGCCCGCGGGAGCCCCAAGAGCTGGTCCCCGCGGGACATGGAGCGCGCACTGCAGGCCCTACGAGACCGGCGCATGAGCCTAACCAAGGCATCTGCGACGTACGGCATCCCGTCCACGACCCTCTGGCAACGCGCTCACCGGCTTGGCATCGACACCCCGAAGAAGGACGGCGGAGCCAAGAGCTGGGGCGATGCCGATCTTCGCGCAGCACTACTCGCACTACGCGCCGGCACACTCTCCGCCAACAAAGCCAGCAAGGCCTACGGTATCCCCAGCAGTACGCTGTACAAGATTGCCCGCCGGGAGGGCATCCGCCTGGCGGCGCCGTTCAACGCCGCGCCCACCTCCTGGCGGCGCAGCGACCTGCAGAGAGCCCTGGCCGCCATCCGCTGCGGCGCCGCGTCGGTGCAGCGTGCTGCCGCACAGTTCGGCATCCCTACTGGTACCTTATACGGAAGATGCAAGAGGGAAGGTATCGAGCTGTCTCGCTCTAACCCCACACCTTGGTCTGAAGATGCGATGGGGGAGGCGCTTGAAGCGGTTAGggtTGGCCAGATGTCCATCAACCAGGCAGCCATACACTTCAACTTGCCCTACTCCTCGCTTTACGGAAGGTTCAAGAGATGTAAATATCAAACTCAGAGTCTACAACCAGTCCAACAACCGGATGTGCAGAAAAGCCTCGACATGGAACAACAAAACCAACATCAGAATCAAGACTCACTGGCATATTATCACACCTTACCTTCTCATACATTTCATAACATCTCTGAAGaccaaacaaatatacaaataccgTACAGCCAACTTCTGGGTGAGGTGCACGACACGATGCATGGTCACATCCTGCAGGAGCAATATGGCGGTCAGGGACTTTATTATACGCAAGGTTGCTACAGTGGAGTGGCAACCAGTTGA
- Protein Sequence
- MPSYGLFQVKCEPPSDEEDSNSQFAHNFLPNQLTTSELVTVKVEAVDQADEDSASNILHHLQVGGELELTPPAPAAPAATPVHARRCPPPQASPDSFETLEPARSATGTTLLDRHMQLLNASNVDPDFVPLMPVKDEPLSEGEQQQLSDDASESGAAYEAAEARGSPKSWSPRDMERALQALRDRRMSLTKASATYGIPSTTLWQRAHRLGIDTPKKDGGAKSWGDADLRAALLALRAGTLSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWRRSDLQRALAAIRCGAASVQRAAAQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQTQSLQPVQQPDVQKSLDMEQQNQHQNQDSLAYYHTLPSHTFHNISEDQTNIQIPYSQLLGEVHDTMHGHILQEQYGGQGLYYTQGCYSGVATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00957878;
- 90% Identity
- -
- 80% Identity
- -