Tacr021206.1
Basic Information
- Insect
- Tachystola acroxantha
- Gene Symbol
- -
- Assembly
- GCA_963506565.1
- Location
- OY735895.1:1806575-1809550[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.048 3.1 9.0 8.2 1 23 152 175 152 175 0.97 2 18 7.3e-05 0.0047 17.8 2.9 1 23 184 207 184 207 0.96 3 18 0.0025 0.16 13.0 0.6 2 23 219 241 218 241 0.97 4 18 0.0001 0.0065 17.4 1.5 1 23 250 273 250 273 0.97 5 18 0.0005 0.032 15.2 3.0 1 23 285 308 285 309 0.96 6 18 0.00015 0.0095 16.9 0.6 2 23 334 356 333 356 0.96 7 18 0.0016 0.1 13.7 1.2 2 23 366 388 365 388 0.96 8 18 0.14 8.9 7.5 1.9 3 19 394 410 392 413 0.92 9 18 0.0031 0.2 12.7 0.6 2 21 418 437 417 440 0.94 10 18 0.021 1.4 10.1 1.5 3 23 450 471 449 471 0.96 11 18 0.00011 0.0074 17.2 2.4 1 23 476 499 476 499 0.94 12 18 0.0013 0.087 13.9 1.0 2 23 511 533 510 533 0.95 13 18 0.15 9.3 7.5 3.2 1 23 556 579 556 580 0.93 14 18 0.34 22 6.3 0.1 2 23 586 607 586 607 0.93 15 18 0.1 6.5 8.0 1.7 2 23 614 635 613 635 0.97 16 18 3.3 2.1e+02 3.2 1.1 3 23 643 665 641 665 0.92 17 18 0.028 1.8 9.7 0.1 1 23 701 723 701 723 0.96 18 18 0.35 23 6.3 1.9 1 23 729 752 729 752 0.96
Sequence Information
- Coding Sequence
- ATGTCTGTTTACGAAGAATCagatttgaaaataaaaatcaagATTGAACGAGAGGAGAATGAAAGGAGAGATCCGACCTCCTTCCTTCCAGAGGAGCCGATGTCGtatgaaattaaaaagaaaaagaagaaaaagaaaaggaaACAAGAGGATCCGTTCAAAGATATAGAAGAGAAGGTGCTTGTAACCGAGAGAATTATGATGGCCGATACGGAACAGCCGTTGGATCCTGAGGTTAACATTAAAGTGGAGAATATTGAAGTAGAGTTGGATTTTAATGATTTTGCCGACAACACGGGTCTAATGTTAGAGGCGCCACAGAGTGAGGACAGCCAAGAACCAGAAGTCAAAATTGAACAGCAGAACCACGATGCTGTCATACTGACGTTTGAAAGTATAATCAATGACAAAAACATCATCGGATACAGCCAAGACGACAAGTCTACAGCCAATCATGTCTGTAAAATATGTCATCTAATCTTTCAAACCCACAAAACCTTACGTATGCATCAGAAAAGAAAGCAtaaaatatttcgaaaattcttcAACCACATCTGTGACTACTGCGGTATGTCATATGATCATAAGAATAGTTTAGTTGCCCATATGAAAAGGAGACATGGCCCCAATGCTGATTACGATATGACAGAGAAAACGTGTGATATTTGCGCGTTAGTTTTTAAAGGTAACGCTAGACTTAGAATGCATATGCGACGAAAGCATGGGTCTTTCGAAGAATCATTTAAACATGTATGCAAAGAATGTGGGCTGACGTATGATAAAAATCGGAGTTTAATCGTTCATATGCAGCGGAAGCATTCGCGTGACAGAAAACCGATTGTCGACCAATGGTTCAACTGCCCTTTTTGTCCGAAGATATTTACTAAAAGAGAAACTTATGCGAGACATGTCCAAAGGAAACATCATGTGGATGAAGATGGTATTCCTCATACCACTGAAGAGTTTTGGGACAGTTTCAAGAATGAAGCCGGAGAAATTTCATGTAAAGATTGTCCTCTAGTCTTTTCTTCGATCAATTTCTTAAAACTACACATGAGAAGAAAACATAATGCTTTGAAAGAAGATTTTAGATTGAAATGTCGGATTTGTAATTTGTCTTACGATAAAATTGAAAGTCTAAAACGGCATGTGAGGAGGAAACATGATAGTGGATCACACTGTAATGTTTGTAAAAAACAATTTGATACCCGAGAGTTATATTTGAATCATTCTCATGTAAAAGTTATAAAAGAATGCTCTCTGTGTGGTCTTATTTTCGCATCGCAAGGAGGCCTAGCCAAGCATTTACGATGCACGCACAAAATTGAAACTCCAAAAGTGGTTTTCTGTAATATATGCAACGAAGGTTTCCATGATAAACGTCAGTTGAAACCGCATCTCATGAAAGTGCATTTAAAAGTCTCCTACACTTGTGGGTATTGTAAGAAAGTGTTTAGAGCTAAAGAAAGTTACCGgcgtcatattttatttaaacaccCAGTCAATAATACCTCTAATAGTGAAATGCAGAAGTGTGACCAGTGTACCGAGACGTTTCCCGATGAATTTGAACTGTGTAGACATGTAAACTTGGCTCATCTGAACTCTGGCTCGGATTTAGTTAAAGATTTAATGGAAGTTAAGAAAGAGGAAGATATACAGTCTTTCCATTGCACGAAATGCCCGGAGACATACTTAAGTTGGGAGCAACTACGCTTGCATTACGAACAGAATCATCACACCGTCAGCGATGCACAATGCCAAATTTGTGGCCAAATAGTACCTGAAAATGAATTACGGAAACATATAAAAGCATCACATACGGCCAACGAGGAAACACAATGTAAATATTGTGAATTTAAGACTAATATTAGAGCTAGTATGACGCAGCATATGTTAAGACATAAGAACGCTTCTACTATACATTGTGAATATGCCGGTTGTAGATATAAGACTTACTATGAAGGTGCCATGGAGAAACACAAGCGGAGACACCAGGACCAAGGCGTTAAATTGCAATGTACGCAGTGTCCGTTCCAGTCgatgaataaatacatactaAAGTACCATGAAGAAGCCCATGCAACGGGCAAAAAACGTTATGCCTGTGATCAATGTGACTATGCCACAGTGCTGCCCGCTAACCTAGTTCAGCATAAGTATAAGCATTCGTCGGAAAAGAGATTTAAATGTGAAGTGTGTCCATTCGCTTCAAAATATAATACCTCGTTAAGATTTCATGTTAAGAAGAAACACTGTGATTTGCCTACGTTCAGATAG
- Protein Sequence
- MSVYEESDLKIKIKIEREENERRDPTSFLPEEPMSYEIKKKKKKKKRKQEDPFKDIEEKVLVTERIMMADTEQPLDPEVNIKVENIEVELDFNDFADNTGLMLEAPQSEDSQEPEVKIEQQNHDAVILTFESIINDKNIIGYSQDDKSTANHVCKICHLIFQTHKTLRMHQKRKHKIFRKFFNHICDYCGMSYDHKNSLVAHMKRRHGPNADYDMTEKTCDICALVFKGNARLRMHMRRKHGSFEESFKHVCKECGLTYDKNRSLIVHMQRKHSRDRKPIVDQWFNCPFCPKIFTKRETYARHVQRKHHVDEDGIPHTTEEFWDSFKNEAGEISCKDCPLVFSSINFLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHVRRKHDSGSHCNVCKKQFDTRELYLNHSHVKVIKECSLCGLIFASQGGLAKHLRCTHKIETPKVVFCNICNEGFHDKRQLKPHLMKVHLKVSYTCGYCKKVFRAKESYRRHILFKHPVNNTSNSEMQKCDQCTETFPDEFELCRHVNLAHLNSGSDLVKDLMEVKKEEDIQSFHCTKCPETYLSWEQLRLHYEQNHHTVSDAQCQICGQIVPENELRKHIKASHTANEETQCKYCEFKTNIRASMTQHMLRHKNASTIHCEYAGCRYKTYYEGAMEKHKRRHQDQGVKLQCTQCPFQSMNKYILKYHEEAHATGKKRYACDQCDYATVLPANLVQHKYKHSSEKRFKCEVCPFASKYNTSLRFHVKKKHCDLPTFR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00806982;
- 90% Identity
- -
- 80% Identity
- -