Hpse004105.1
Basic Information
- Gene Symbol
- Zfa
- Assembly
- GCA_947369225.1
- Location
- OX376311.1:8006990-8009595[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00089 0.057 14.3 4.8 1 23 154 177 154 177 0.97 2 18 4.4e-05 0.0028 18.4 1.0 1 23 186 209 186 209 0.96 3 18 0.0014 0.091 13.6 0.7 2 23 222 244 221 244 0.97 4 18 0.00018 0.011 16.5 1.3 1 23 253 276 253 276 0.98 5 18 0.00039 0.025 15.4 2.0 1 23 288 311 288 311 0.97 6 18 2.6e-05 0.0017 19.1 0.6 2 23 337 359 336 359 0.97 7 18 0.00043 0.028 15.3 1.3 2 23 369 391 368 391 0.96 8 18 0.067 4.3 8.4 1.6 3 19 397 413 395 416 0.92 9 18 0.00089 0.057 14.3 0.5 2 21 421 440 420 443 0.94 10 18 0.11 7 7.7 1.9 3 23 453 474 452 474 0.93 11 18 0.0038 0.24 12.3 3.5 1 23 479 502 479 502 0.93 12 18 0.00068 0.043 14.7 0.2 3 23 515 536 513 536 0.96 13 18 0.0026 0.17 12.8 0.3 1 23 560 583 560 583 0.96 14 18 0.82 53 4.9 0.1 2 23 590 611 590 611 0.91 15 18 0.023 1.5 9.9 0.8 2 23 618 639 617 639 0.97 16 18 2.5 1.6e+02 3.5 1.8 3 23 647 669 645 669 0.92 17 18 0.031 2 9.4 0.1 1 23 705 727 705 727 0.96 18 18 0.2 13 6.9 2.0 1 23 733 756 733 756 0.96
Sequence Information
- Coding Sequence
- ATGTCAGTGAAACAAGAATCAGGCTTAAAAATAAAAATAAAACTCGAAAAGGTAGAAAATGAGCGGAAGGATCCAACATCTTTCCTACCGGAAGAGCCGATGTCTTATGAAATTAAAAAGAAAAAGAAGAAAAAAAAGAAGAAGCAAGAAGATCCATTCAAGGACATACAAGAAAAAGCTCTTGTTACTGAGAGGATTATGATGGCTGATACGGAATCGGTATTGGACCCTGAGGTTAATATTAAAGTGGAGAATATTGAAGTAGAGTTGGACTTTAATGATTTTGCCAACGATACTGGCCTAATGCTAGAAGGTCCACACAGTGAAGATAGTCAAGAACCTGAAGTCAAAATTGAACCGCAAAATCATGAAGCAGCCATACTTACGTTTGAAAATGTAGTCAAAGAGAAATCAGTCTTAGAATACAGCCAAGGCGTGACTAACGACGCACCAACTATGCATGTCTGTAAAATATGCCACCTAGTCTTTCAAAGTCCAAAAACATTACGAATGCATCAGAAAAGGAAGCACCTAGTTTTTCGAAAATCCTTCACACATATTTGTGACTACTGTGGCATGTCATATGATCAGAAAAATAGTTTAGTTGCTCACATTAAAAGGAAACATGGACCGAATGCTTCAGAAGATGATATGGAAGAAAAAACTTGCGATATTTGCTGGTTAGTTTTCAAAGGAATATCGAGGCTTAGAATGCATATGAGACGAAAACATGGGTCTTTTGAGGATTCATTCAAGTATGTCTGTGATGAATGTGGGCTCACATATGACAAGCATAGAAGTCTTTTAGTACATATGCAGCGTAAGCATTCCATTGACAGAAAACCCCCTGTTGACCAATGGTATAACTGTCCATTTTGTTCAAAAATTTTTACTAAGAGAGAAACTTATGCCAGACATGTACAAAGAAAGCATCAGGTCAACGAAGATGGTATACCTCAGACCACCAATGAATTCTGGACCATGTATAAAAACGAAGCTGGAGAAATAACATGCAAGGACTGTCCTCTAGTATTTTCTTCCATCAATTACTTAAAATTACACATGAGGAGAAAACATAACGCTTTGAAAGAAGATTTTAGATTAAAATGCCGAATTTGTAATTTGTCCTATGACAAGATAGAAAGTCTCAAGCGGCATATAAGAAGGAAACACGACACAGGATCACACTGTAATGTATGTAATAAGCAGTTTGATACTAGAGAACTATATTTGAACCATTCTCACGTGAAAGTCGTAAAAGAATGCTCAATTTGTGGACTTATATTCGCGTCTCAAGGAGGCCTAGCGAAGCACTTACGATGTACACACAAAATAGAGAGTCCAAAGGTCGTGTTCTGCAATATATGCAATGAAGGATTCCATGACAAACGCCAGTTAAAACCACATTTTATGAAAGTGCATTTAAAGGTGTCGTACACATGTAGATTCTGTAAAAAAGTTTTTAGAGCTAAAGAGAGTTATCGACGTCATGTTCTATTTAAACATCCAGTCAAAACACACACTAATAATGAGTCCCAGAATTGTGATCAGTGTACTGAAACATTTCCTGACGAATTTGAACTCTCTAAACACATTAATTCAGCTCATAGTAACACTATATTGGACGTAGTTAAACAAGACGTAATGGATATAAAGAAAGAAGACAATACGCAAACGTTTCAATGTACAAAATGCCCAGAATCGTACTTAACCTGGGAGTTACTTAGAATACATTATGAAATGAATCACCGCACTGTTGGAGATGCACAGTGTCAAATATGTGGTCAAATCTTACCCGAGAATGGGTTGCAGAAACATATAAAAGCTGAGCATACTGCTAATGTAGAAGTGGAGTGCAAATATTGTGAATTTAAAACAAATGTTAGAGCCAGCATGACGCAGCATATGTTAAGACACAAGAACGCTTCTACAATCCATTGTGAATTCTCTGGATGTAGATATAAGACATACTACGAAGGTGCCATGGAAAAACATAGGCGGAAACATCAAGATCAAGGTGTGAAGCTACAATGCACACAGTGTCCATTCCAATCTATGAATAAGTACATTCTTAGATATCACGAAGAAGCTCATATGACGGGTAAAAAACGTTATGCGTGTGACCAATGTGATTATGCTACTATACTGCCAGCGAACCTTGTTCAGCATAAGTATAAGCATTCAACGGAGAAGAGATTTAAATGTGAAGTGTGTCCATTTGCCACAAAATATAATACATCGTTACGGTTCCATGTTAAGAAGAAACACTGTGATCTACCGACTTTCAGTTAA
- Protein Sequence
- MSVKQESGLKIKIKLEKVENERKDPTSFLPEEPMSYEIKKKKKKKKKKQEDPFKDIQEKALVTERIMMADTESVLDPEVNIKVENIEVELDFNDFANDTGLMLEGPHSEDSQEPEVKIEPQNHEAAILTFENVVKEKSVLEYSQGVTNDAPTMHVCKICHLVFQSPKTLRMHQKRKHLVFRKSFTHICDYCGMSYDQKNSLVAHIKRKHGPNASEDDMEEKTCDICWLVFKGISRLRMHMRRKHGSFEDSFKYVCDECGLTYDKHRSLLVHMQRKHSIDRKPPVDQWYNCPFCSKIFTKRETYARHVQRKHQVNEDGIPQTTNEFWTMYKNEAGEITCKDCPLVFSSINYLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHIRRKHDTGSHCNVCNKQFDTRELYLNHSHVKVVKECSICGLIFASQGGLAKHLRCTHKIESPKVVFCNICNEGFHDKRQLKPHFMKVHLKVSYTCRFCKKVFRAKESYRRHVLFKHPVKTHTNNESQNCDQCTETFPDEFELSKHINSAHSNTILDVVKQDVMDIKKEDNTQTFQCTKCPESYLTWELLRIHYEMNHRTVGDAQCQICGQILPENGLQKHIKAEHTANVEVECKYCEFKTNVRASMTQHMLRHKNASTIHCEFSGCRYKTYYEGAMEKHRRKHQDQGVKLQCTQCPFQSMNKYILRYHEEAHMTGKKRYACDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01401553;
- 90% Identity
- -
- 80% Identity
- -