Truf028188.1
Basic Information
- Insect
- Tachinus rufipes
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963932245.1
- Location
- OZ010744.1:8980438-8994037[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1 9.7e+04 -6.5 7.3 52 52 136 136 53 226 0.57 2 4 0.32 3.1e+04 -3.7 3.5 168 216 173 218 129 288 0.62 3 4 1.4e-107 1.4e-102 345.5 33.7 1 300 335 618 335 618 0.94 4 4 0.0061 5.9e+02 1.9 4.0 120 170 616 666 615 679 0.86
Sequence Information
- Coding Sequence
- ATGGACACACGTACAGATAAGCCGGAGGAAATGAGACGCCCAGACAGTGAAGATACCGTAGATAACAGTATCAGTGATATTTTGGATGACTTGGAAGGGGATTCATCCGATGAGGATGATTTAGTGCAAACAATGGGTCAGAAACATCCGCGTCCTTTAAAAAGGAATAAAAGTAAAGTTGTTAATGaggatgttttaaaattagcaaaaattattagtGAAAGTGATacgaaaaatatagaaattttaaatgaagAAAGTGTGAATGTTAAAAATTCTAAtgaattagtttgcaaaaaagaaattattgaattaagtgatgaacaaattaataataattgtgaaGAAAATAGTGATAAGGAATCTATTAATGAAGATGTAGTTACAGAATCGGTTAAAGAAAATGTAGTTAGTGAATCAAAAGAATTAGTTAAGGAAGATATTAGTGAATCAGTTAAAGAAGTTGTTCTGGAATCAGTAAGTTCATATTACAGTGAAGGAAGTATAGATTCTGATTTTATAAGTCAGGATGAAGAAATTGTTACTGGAAACGAATTGGTTGTTGAGAAAAATGAGGATAAAACcgaaaatgatgtttttgaaaatcataaatcaattattgctGAAAATGAATCGACAATTATTGAATCAAATGAAACTAATACTTTAATCATTGCTGAAACTGTTATTGATGACAATGAACCCGATGCAGTTATTGATGATAATGAGGCATCAAATGAAGCTATTAACAAATCACTCgttactaaaattgaaaataattccaCAGAAACTGAGAACAATAGTGATATTGTGTCAACAACATTAACCGAATCAGAtgatgagaaaattgttttacgaAACAAACATCCACATAATGATGATTATGGGAATAAAGATGATTTTAATGGTGTTTATCTAACGGACTCTACTCTTGATGAAAGCAATGATGTTGATAGTGAAAGTGAAATTATATGCAGGTTTTTGGGATCTTCAGTAGGTGATgcgGAGGCTCGTCTTCTCGCAAGGAGAGCTGCCCGCGCCGAGGCACGCGAGATCCGCATGCGGGATTTGGAGAGGCAACAACGCGAACAAGAAGAAAACGCCGATAGACAATTTGACATGAATGCTGATCCGTTAATACGGCGGCCTGCTAGCAACACCAGCAGATACCTCTCCAGTCGAAGATCATCGGAAGATTCATTGGAAGATACCGGCAGTCTCAGGGATCTAAGGCATGAGCTCAAGGAAGTCGAGGAGAAGTTCCGGAAGGCTATGATAGCAAATGCACAATTGGACAACGATAAAGCAGCGCAGACCTATCAATTGGAATTACTCAAAGAcaggttggaAGAATTGGAGGAGGAACAATCGCAATTGAAACGCGAACATCGCGACAAGTGCCGCGAATTCGAACAGCTGAAGCGATTGACGACGAAACTGAAAGAGGATCTGGCGATAGTCCGGGCGGAACTGGAGGATCGCGACCGTCTGATAGCGGACAAGGGATTGGTGATAGTGTGCACCGAGGAGCCGGCGACGGAAGAAAACGGACCGACGCGGATCAAGCGGGCACTGGTCAGCGCCGAGAACGCCCACCTACTCGAAAACGCTGGCGAGGGTAGTCTGGACGTGCGACTGGCGAGTTTCGCCAAAGAGAGAGGCGAACTGCAAGATCAAATTAGTCATTTAAAGTTAGAATTAGAGGAGGAGAAGAATAAACGGAGGAAGCACAGCGGGGCGACGCTTAACGGGCCTGATTCGGATTACGATGCTGCTGATATACAGAGAGAAGCAAGCAAACAATTAGCAGAGTTCAAATTCAGGTCCCAAAAGGCGGAACAAGATGTTGCAACGTTGCAAGCCACCGTTGCCAGATTAGAGAGTCAGGTAATTAGGTACAAATCGGCGTCGGAGATTTCGGAGAAATCGGAAGAGGCTCTCAAAGCCGAAAAGAGGAAACTGCAGCGAGAGGCTCGAGAGGCTCAAAGTAGAGCAGAAGAATTAGAAGTTTCCAATACACACCTAATAAAACGACTGGATAAACTCAAAAACGCCAAGTCAGCTTTACTAAAAGAACTTTGA
- Protein Sequence
- MDTRTDKPEEMRRPDSEDTVDNSISDILDDLEGDSSDEDDLVQTMGQKHPRPLKRNKSKVVNEDVLKLAKIISESDTKNIEILNEESVNVKNSNELVCKKEIIELSDEQINNNCEENSDKESINEDVVTESVKENVVSESKELVKEDISESVKEVVLESVSSYYSEGSIDSDFISQDEEIVTGNELVVEKNEDKTENDVFENHKSIIAENESTIIESNETNTLIIAETVIDDNEPDAVIDDNEASNEAINKSLVTKIENNSTETENNSDIVSTTLTESDDEKIVLRNKHPHNDDYGNKDDFNGVYLTDSTLDESNDVDSESEIICRFLGSSVGDAEARLLARRAARAEAREIRMRDLERQQREQEENADRQFDMNADPLIRRPASNTSRYLSSRRSSEDSLEDTGSLRDLRHELKEVEEKFRKAMIANAQLDNDKAAQTYQLELLKDRLEELEEEQSQLKREHRDKCREFEQLKRLTTKLKEDLAIVRAELEDRDRLIADKGLVIVCTEEPATEENGPTRIKRALVSAENAHLLENAGEGSLDVRLASFAKERGELQDQISHLKLELEEEKNKRRKHSGATLNGPDSDYDAADIQREASKQLAEFKFRSQKAEQDVATLQATVARLESQVIRYKSASEISEKSEEALKAEKRKLQREAREAQSRAEELEVSNTHLIKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -