Truf058307.1
Basic Information
- Insect
- Tachinus rufipes
- Gene Symbol
- Foxk1
- Assembly
- GCA_963932245.1
- Location
- OZ010747.1:64198648-64234196[+]
Transcription Factor Domain
- TF Family
- Fork_head
- Domain
- Fork_head domain
- PFAM
- PF00250
- TF Group
- Helix-turn-helix
- Description
- The fork head domain is a conserved DNA-binding domain (also known as a winged helix) of about 100 amino-acid residues. Drosophila melanogaster fork head protein is a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [1]. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [1, 2, 3]. The fork head domain binds B-DNA as a monomer [2], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-41 9.5e-38 130.5 0.5 1 86 269 353 269 355 0.97
Sequence Information
- Coding Sequence
- atgtattctaGGACGACGGAAAGCGACGCCTGGGCTCTGCTTGCCCTAAAATCGGCCCCAGCTAGCCCCTCCAAGGTGCAGTGGAGCCCTGAAGACAAGGGGGAGGCAATCGCCCGTCTCGAGGGTCGCGAGTTCGAATACCTGGTGCGCCAGAATAGGATCACGATAGGAAGGAACAGTAGCAGAGGTGATGTTGATGTGAATATGGGACATTCGAGTTTTATATCTCGTAGGCATCTGGAGGTGTTCTTCGATCATCCTTATTTCTATATGATGTGCAACGGGAAAAACGGTGTTTTCGTCGATGGTGTTTTTCAAAGGAAAGGGGCCCCATCGATACAACTACCCAAAACGTGTACCTTCAGATTTCCAAGTACAAATATAAGGCTGTCATTTCAATCGCTAGTGGACGAGGCTAGTGAGCCACCCCCTAAAGTGCGTGAAGTGTCGCCGGTTAGAGTGAGAGACAGATCGGGTGGAGGATATCCGTTACCACCTTTGCGGATTAATATACCTGTAGATTCTGATAATTATGGTAGTCCATTCCCATCTCCAACGGGCACTATCAGTGCCGCTAATAGTTGTCCTGCTAGTCCTAGagGTGGTCATGGTAGGAGGAATATTTCAGCAGATCTGCAAATGGCCGCATATGCAGCGGCGCAGGTTGCTCACAGAGAAGAGGGCCATCATGTACAGTCCAGTCATAGTCCCGATCAATACAGACAACCAACACCTAATGGAAATTCGatACCCCCGGTAGTGATAAATGACGGTTACGGCACGAGCGGTAGCAGTAAAGACGACTCAAAACCGCCATATTCATATGCACAGTTGATAGTACAAGCAATAGCGAGCGCCAACGAGAAGCAACTCACCCTCAGCGGCATCTATAGTTACATCACAAAGCATTACCCCTATTACCGGACGGCAGACAAGGGCTGGCAGAACTCCATCAGGCATAATCTTAGTCTCAATCGATACTTCATAAAGGTACCTCGAAGTCAGGAAGAACCAGGTAAAGGTAGTTTCTGGCGGATAGACCCTCAATCTgaatcaaaattaatagaacAAGCATTTAGACGGAGGCGGCAGCGAGGGGTGCCGTGTTTTAGAGCTCCATTTGGTTTAAGTTCCAGAAGTGCACCGGCTTCACCGAGTCATGTAAGCATGTCGGGTTTGATGACGCCGGAATGCTTATCGAGAGAAGGTTCACCGGCTCCCGAGCACATGTTAGAAGTAAGCCAATCCGCTCCGGGAAGTCCCGGAAATGTGGCGTATCCCGGTTCCGGTTCCATGATAGGTCATCAGCAGATGACGTCGTTGGTGGGTGCTACGAAGGCGCGATTGCTGTTACCCCAACGGGACGGCGAGCATATGCAACAAGGTTCATCCGTCGGGCTGCCATCCAACGGACAAGAGCATAGTAACGAAAAGTACCACATAGTCAGTCAGGGTATCGTCGAGGAACGGTCCATGTCGCCCGCAGCATTCTCCCCCCAACCCGTCATCGTGCAAACGGCTAATTATTCACCATATAGGTAA
- Protein Sequence
- MYSRTTESDAWALLALKSAPASPSKVQWSPEDKGEAIARLEGREFEYLVRQNRITIGRNSSRGDVDVNMGHSSFISRRHLEVFFDHPYFYMMCNGKNGVFVDGVFQRKGAPSIQLPKTCTFRFPSTNIRLSFQSLVDEASEPPPKVREVSPVRVRDRSGGGYPLPPLRINIPVDSDNYGSPFPSPTGTISAANSCPASPRGGHGRRNISADLQMAAYAAAQVAHREEGHHVQSSHSPDQYRQPTPNGNSIPPVVINDGYGTSGSSKDDSKPPYSYAQLIVQAIASANEKQLTLSGIYSYITKHYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPQSESKLIEQAFRRRRQRGVPCFRAPFGLSSRSAPASPSHVSMSGLMTPECLSREGSPAPEHMLEVSQSAPGSPGNVAYPGSGSMIGHQQMTSLVGATKARLLLPQRDGEHMQQGSSVGLPSNGQEHSNEKYHIVSQGIVEERSMSPAAFSPQPVIVQTANYSPYR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01058927; iTF_00920466; iTF_01096421; iTF_00631943; iTF_00049064; iTF_00083709; iTF_00629614; iTF_00631313; iTF_00048467; iTF_00902043; iTF_00022015; iTF_01120683; iTF_00956115; iTF_01498684; iTF_01126163; iTF_01370836; iTF_01535637; iTF_00464470; iTF_01257779; iTF_00422013;
- 90% Identity
- -
- 80% Identity
- -