Basic Information

Gene Symbol
stc
Assembly
GCA_944452685.1
Location
CALYBZ010000381.1:251274-257438[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 2 3.5e+04 -4.4 1.6 15 19 658 662 657 662 0.81
2 13 0.072 1.2e+03 0.5 0.2 4 10 691 697 690 699 0.95
3 13 2.1e-05 0.37 11.8 16.7 1 19 703 720 703 720 0.93
4 13 1.1e-06 0.019 15.9 13.7 3 19 758 774 756 774 0.91
5 13 1.6 2.8e+04 -3.8 0.6 7 11 778 782 778 782 0.87
6 13 0.00061 11 7.1 20.3 1 19 814 832 814 832 0.98
7 13 1.9e-05 0.32 12.0 14.4 4 18 880 894 873 895 0.86
8 13 0.0087 1.5e+02 3.4 9.3 1 11 935 945 935 946 0.96
9 13 2 3.5e+04 -4.8 1.1 4 10 950 956 950 956 0.58
10 13 6.1e-10 1.1e-05 26.3 15.5 1 18 962 979 962 980 0.97
11 13 2 3.5e+04 -8.6 10.5 10 18 1027 1036 1016 1037 0.76
12 13 1.8e-08 0.00032 21.6 11.5 1 17 1073 1089 1073 1095 0.93
13 13 5.7e-07 0.0098 16.8 14.0 1 19 1105 1124 1105 1124 0.96

Sequence Information

Coding Sequence
ATGTCTGCAGATTCAACATCTCAGTCTTCTTCACAACCTCCACTGTCTCAACTTTGGCCGGGTTTCGGTTCTACAACCTCCGATCTCAATAACCCTCTGGAACACCATCAACCAAATAATTCACCATCACCTTTGTACCCAAATTTGGACAAACAGCAACATCAGAACAACAACTATGTGAATTTCCACCAATTTATAATGCAGCATAATTTTGCGTCACCGAGTCAAACTAATTCGCCTATGTCATCATCTCTTGAAGACACATTTGCCAAACAAGTTGGAGGAAACTCTCATTACGATGATGTTTTCAATATTATGAACATGGGAGTCCTGAATAATAATACTAGCAGTAAAGACAATAATTTAAGCCACAGGAATGTCTTTTCGTCGCAACAAATTTTGTCACCCATGTCATCATCCATAGGGGATACCTTTGGGAAACAAGATGGAAATAATTCCAATTACGATGACGTCTTGAATATACTTAACAACATGGGAAACATGACCAATAATATTAATGCTAAAGGGAATAATTTAAGCAGCACGAATGTCGCTTTAGCTGTCAGTCATAACAGTGACAGCAATAATTCTAATAATCAACAGCAGCAGCAGCTCAAACAACAACAACAATACAATTTTTTTAATCCATCTCAAACGCATTATCCATTTGCCAATAATCACATTTCCAGCAACAATAGTATATTTTCGGATGGCTTATATGGCTATAATATTAATCCTAATGCAGGAGCTGGAACTCCGAATTCAGCTGCCAATTCAACACCATCTGCATCGGAAGCTCAAAACTATTATGATGCAGTAAATTCATATAATAACTTTCATACAAACGGAACTACTTACTATGCGAATCCTTTTGCCACAGGCTTCGATTTTTCCAATACCAAATTGCAAATTACTGCCCCCGAATTTGTACCACGATTTGATAGACTTTCGTTGAATGAAACTGCCCAAGAAGAGAAACAGCAAACCGATAATATTGCTTTAAACTTTGAAACTGTGAATGATAAATTTATTAAGCCGCAAGATGAATATGGGCGACTAGATATAGTCACTTCAGGAGATCCTAAAGATATAGAGAAAAATGCAGATACCAGCTTTGAAAAGGAAGAAAAACGCGAACAACAGAGACATGAACGTACCAGAGGCAATAATCGCCATCAGAATAAACATGACAAGGAAAATAACAAGAGAAATAATAATCGCTTGGAAAAGAATATGGAAAGATTTTCACGAAATTTGCAAGAGAAGCAGCAAAATAATGATTCGGCTTCAAACTCTAATTCTTCAACGCCTTCTTTAACTCTGAACGGTAAGGAGCGAGATTTTCAGAATCAAGGAGTTTCTGTTAAACCGGCAGGAGCTTTTAACAAAAATCAGCGCGGTTCAATTTGTGGTGGTGGCAATGGCGACAAACCAAGAACTGGCGACACACAAGACAAGGTCGTAGATAAAAACAATTACAACAAACGTTATCAAAATGGCAGACGTCCTCAAGAATTTGGAGAGCGCGAAGATCGCTTTGAGAGGTATGTAGAGCGTGGAGACCGTTCGGAACGTGGTCATAACCAGCGTAATCAACAACGAAACGACTATCATCAACGCTATGATAATTATCGCAGCAACAAAAGACGTGATGATTGGAACCGTAATCGCGATCGCATAAATGGTTTCCGAGTTGAAGAAAAGTACTCTAATGATAATGGCAAAGAAAGTCCTTTGCCTTCGCCCGAAAAGCGCTCACCTAAAAAGTCCTATGACAAAGAAAACGAAAAACTTTCTCAGAGAGAGAAACTTATAAGAGATATAGAGACTAGACGCCTGGAATGTTTGGTTTGCGTAGAGCCCATTAAGGCTCATCAGGGTGTATGGTCTTGTCACGGTTGCTATCATATACTCCATTTGCAATGCATAATAAAATGGGCTTCATCTTCAAAGTCAGATAACGGCTGGCGCTGTCCCGCTTGCCAGAATGTTGATAAGAATGTTCCACGAGACTACTATTGTTTCTGTGGCAAATTGAAAAATCCACCAAATAATCGTCAAGATATTGCCCATTCTTGTGGTGAAGTTTGTGGTCGTGTAGAGGGCTGTTCCCATGCCTGCACTCTACAGTGCCATCCGGGACCGTGTCCTCCCTGCCAGGCTCAAGTTAAGCGTGGATGTGGTTGTGGCAAAACTTCTAGAATTATGCTGTGTTACGTCAAAGAGACTATAGAGTGTGATTCAACTTGTGAAAAACTATTGAACTGTGAATTACACATTTGCCAGGAAAAATGTCATGAAGGAAAATGTCCTCCTTGCAAGGAGAAAGTAGAGCAGAAATGTCACTGTTCTAAGCAGGACAGGCATGTAACGTGCACACGCGAATCCCAAGACAAACATAATTATTCCTGTGGCAAACCATGCGGCAAGGATTTAAGCTGTGGCAATCACAAATGTAAAGATTGTTGCCACCCCAATGGATGTAGACCTTGTAAATTGAGTCCTGATTATGTGACTTCTTGTCCCTGTGGCAAAATGCCCATTGTAAGCGAACAGCGCAAATCTTGCTTAGATCCCATACCTGTTTGTGAGGGAGTGTGTGGCAAGACTTTGAAATGTGGCAAAGCAACCAATCCTCATCACTGTACATCTAAATGTCATTTGGGAAATTGTCCCCCTTGCAACAAACAAACAGCTGTCAAGTGTCGCTGTGGTCATATGGATCAAATGATAAAATGTCGTCAACTATCGACAAGAGCCGATGACGCTAGATGCAAGAAACGTTGCACTAAGAAGCGTTCATGCGGCAAACACAAATGTAACCAAGAATGCTGCATAGACATCGATCACTTTTGTCCACTGCCTTGTAATTATACGCTGTCTTGTGGCAAACACAAGTGTGATCAACCCTGTCATCGGGGCAATTGTCCGCCCTGTTATCGTTCCTCTTTCGAAGAACTCTTTTGCGAGTGTGGTGCTGAAGTTATCTACCCTCCTGTGCCCTGTGGCACCAAGCGTCCCGTTTGCAAACTCCCATGTTCGCGTAAACATCCATGCGACCATCCTCCACAACATAACTGCCACTCGGCTGCCACTTGTCCTCCCTGTATGATGTTCACCACAAAGTGGTGTTTTGGCCAGCATGAACAACGTAAAACCATTCCGTGCTCTCAACAAAGTTTCTCGTGTGGCTTGGCTTGCAATAAGCCATTGCCGTGTGGACGTCACAACTGCATTAAAACTTGTCACGAGGGACCTTGCCAAACGGCAGGAGAAATATGTAAACAAAACTGTACTACACCGCGCAGTACTTGTGGCCACAAGTGTATGGCGCCATGCCACAATGGAGATTGCCCAGAGACTCCCTGCAAGGAAATGGTGGAAGTGCAATGCGAATGCGGCAATCGCAAGCAAATGCGCACTTGTGCTGAGTTGGTTAGAGAATTCAGTCGCATAGCCACGGCTCAGTTGGCCTCTTCTATGGCTGAAATGCAGCGTGGCAACTACATGGAGCTGTCTGAAATTTTAGCTCCTGTCAAGCTATCGGGAAAATCGAATAAAACTTTAGATTGCAACGAAGAGTGCCGTCTGCTCGCACGTAACCGTCGCTTGGCTATTGGTCTACAAATACGCAATCCCGATTTGCCATCAAAACTTCAAACGAAATATTCTGATTTGATAAGGAACTATGCAAAACGTGATCCGGCCCTGGTCAAGTCCATACACGATGCTTTAACTACTCTGGTAAAATTGGCCAAAGAAAGTAAACAAAAATCTCGCTCATATTCGTTTCCCACTATGAATCGTGAAAAAAGGCAGGTGGTACATGAAATGTGTGAAATGTTTGGTGTAGAATCGGTTGCATATGATGCAGAACCCAATCGTAATGTGGTGGCTACTGCTTACAAGGATAGATCTTGGCTCCCTGCTTCCAGTATTATGGAAGTAATCGCTCGTGAGGCTGGCCAAAGACGTGTACCAGTGCCAAGTAATAATGCTTGGGGCTTAAAAAGATAA
Protein Sequence
MSADSTSQSSSQPPLSQLWPGFGSTTSDLNNPLEHHQPNNSPSPLYPNLDKQQHQNNNYVNFHQFIMQHNFASPSQTNSPMSSSLEDTFAKQVGGNSHYDDVFNIMNMGVLNNNTSSKDNNLSHRNVFSSQQILSPMSSSIGDTFGKQDGNNSNYDDVLNILNNMGNMTNNINAKGNNLSSTNVALAVSHNSDSNNSNNQQQQQLKQQQQYNFFNPSQTHYPFANNHISSNNSIFSDGLYGYNINPNAGAGTPNSAANSTPSASEAQNYYDAVNSYNNFHTNGTTYYANPFATGFDFSNTKLQITAPEFVPRFDRLSLNETAQEEKQQTDNIALNFETVNDKFIKPQDEYGRLDIVTSGDPKDIEKNADTSFEKEEKREQQRHERTRGNNRHQNKHDKENNKRNNNRLEKNMERFSRNLQEKQQNNDSASNSNSSTPSLTLNGKERDFQNQGVSVKPAGAFNKNQRGSICGGGNGDKPRTGDTQDKVVDKNNYNKRYQNGRRPQEFGEREDRFERYVERGDRSERGHNQRNQQRNDYHQRYDNYRSNKRRDDWNRNRDRINGFRVEEKYSNDNGKESPLPSPEKRSPKKSYDKENEKLSQREKLIRDIETRRLECLVCVEPIKAHQGVWSCHGCYHILHLQCIIKWASSSKSDNGWRCPACQNVDKNVPRDYYCFCGKLKNPPNNRQDIAHSCGEVCGRVEGCSHACTLQCHPGPCPPCQAQVKRGCGCGKTSRIMLCYVKETIECDSTCEKLLNCELHICQEKCHEGKCPPCKEKVEQKCHCSKQDRHVTCTRESQDKHNYSCGKPCGKDLSCGNHKCKDCCHPNGCRPCKLSPDYVTSCPCGKMPIVSEQRKSCLDPIPVCEGVCGKTLKCGKATNPHHCTSKCHLGNCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCTKKRSCGKHKCNQECCIDIDHFCPLPCNYTLSCGKHKCDQPCHRGNCPPCYRSSFEELFCECGAEVIYPPVPCGTKRPVCKLPCSRKHPCDHPPQHNCHSAATCPPCMMFTTKWCFGQHEQRKTIPCSQQSFSCGLACNKPLPCGRHNCIKTCHEGPCQTAGEICKQNCTTPRSTCGHKCMAPCHNGDCPETPCKEMVEVQCECGNRKQMRTCAELVREFSRIATAQLASSMAEMQRGNYMELSEILAPVKLSGKSNKTLDCNEECRLLARNRRLAIGLQIRNPDLPSKLQTKYSDLIRNYAKRDPALVKSIHDALTTLVKLAKESKQKSRSYSFPTMNREKRQVVHEMCEMFGVESVAYDAEPNRNVVATAYKDRSWLPASSIMEVIAREAGQRRVPVPSNNAWGLKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01398115;
90% Identity
iTF_01399152;
80% Identity
-