Tlur007938.1
Basic Information
- Insect
- Tachina lurida
- Gene Symbol
- -
- Assembly
- GCA_944452685.1
- Location
- CALYBZ010000351.1:10955-18814[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.5e-05 0.0044 18.3 3.6 1 23 167 189 167 189 0.97 2 12 0.26 25 6.5 3.8 1 23 196 221 196 221 0.95 3 12 2.5e-05 0.0025 19.1 0.5 2 23 227 248 226 248 0.96 4 12 1.1e-06 0.00011 23.3 1.3 1 23 254 277 254 277 0.98 5 12 5.1e-05 0.0049 18.1 0.4 1 23 282 306 282 306 0.96 6 12 0.34 33 6.1 6.3 1 23 311 334 311 334 0.95 7 12 0.0013 0.13 13.7 2.5 1 23 621 643 621 643 0.98 8 12 0.0017 0.17 13.3 1.0 1 23 650 675 650 675 0.96 9 12 0.00034 0.033 15.5 1.4 2 23 681 702 680 702 0.96 10 12 0.00035 0.034 15.5 4.9 1 23 707 730 707 730 0.96 11 12 5.9e-05 0.0058 17.9 0.4 1 23 735 759 735 759 0.96 12 12 0.00056 0.055 14.9 4.1 1 23 764 787 764 787 0.96
Sequence Information
- Coding Sequence
- ATGAAATTACTACTGCAAACGCACGCAGAGCAAAAAGTTATCTTAAACAAAATTTTAGGACAGCAAAATAATTCATTGGATTTACATCAATCATTCCCTATTTTATCAGTAGAAAAATTAATTAATTTGAATAGCGAAATCACTAACGAAAATAGGCATGCTTATGTAGAAGCTATGAAGTCTATACTTAAACCATGTGGAGTTGAAAAAAACTTAAAATATATACTAAGTAATAATGTTGTCATGGCCTACAACATTGATGGGGTCCATGGCAAAAAAAGTCTCAAAGGACTGGAAAATGTATACTCCGCACTCATAGAATCCATACCAATAAACGAAAAATTTCCTGGCCCAGCTGAAGACCAATTAAAAAGAGCTATTCAGCTGCAGAAAAAAAGGGATGCTGATCAAAATGTAGCACAATTTGTAATAGCTGAAATAACGTCAAATGAGCATTTGCAAACTGACGCTGTAAGCTCAAGTGAAACTGCAGACAAATTTGCATGTAAAGTTTGTCATAAAACTTTTGAAACCACAAAATATTTAAATTCCCATATGAATTTGCATGATGAAAATCGTAAACGTTTTGTATGCCCAGTAGAACAATGTGGCCGTGTCTATACCTCTAAACAATCCTGCCATATGCACTATAAACGAAGTCATTTGAAAGAGAGATTGCCCTGCAAGATTTGTAAGAAGACTTTTACCGCTGAAAAATCGTTAGTGGTGCATATGCGTTATCATAAAAATGAATTCAAGTATCAGTGCAATCTGTGCGACCAACAATTTGTACAAAATAGCTATCTAACGCGACATATTAAAGTTAAACATAATAACTTCAGATATATTTGCACGGAGCCCAATTGTGGTAAAATGTATCGCAATAGTGGTTCGCTTAGAGTTCATCGTTATACCCATACGTCGATGCCGTTTAAATGCAAACATTGTGAGAAGCAGTATGCAGAAAGATGTAGGTTGGCACGCCATACTTTTCGTGAACATGGTATAAAATACTCCCAGGAAGATTTAGACAAAATGCGCCAGTTTACTAATTCATCCACTACTCAAGGAGGGGACTATAGTCATAATGTCGAAGAAAATGCGGGCGatcaaacagCAACCGAACCTACAACTTCTTCAAAAACATCAGAAGGGAATGGAAAATCGTTAGATACCGGAACCGATCATACTCAAAACGTAAAAAATTCAGAAATAAAACCTATTGATGTAAATATGGCGCCATTTGTAAAAACTGAAATAATGTCACATGATGATTGTTCACAAAGTTACAATATAGGTTCAAGTGAAATTGGGGAAAAATTTACAGCAACAAAAGATACAACTTCTCCAAAAATATCAGAAGGGAATGGAAAATCGTTAGATACCATAACCGATCACACTCAGAACGAAACAAATTCAGAAATTATCACTGCTGACGAAAAAAATATAGCGTCGTTTGTAAAAACTGAAATAACATCAAATGATCATTCACAAACTTACGATGAAGGTTCAAGTGCAATTGAGGAAAAATTTACAGCAACTACAGCCGCAACTTCTCCTAAAACATCGGCTGACACTGGAAAAGAGTTTGATACCGTAACCGATCACACTCATAGCGTAAAAAAATCAGAAATAAATACTGCTGATCAAACTTTGACACAATTTGTAAAAACTGAAATAACATCAAATGCTTCAAGTGAAATTGAGGAAAAATTTACAGCAACTAAAGCTCCAACTTCTCTAAAAAATTCGGAAATAAACACCGCTGATCAAAATGTAGAGCAGTTTGTTATAACTGAAATTACGTCAAATGATCATTCACAAACTTATGATGTAGGTTCAAGTGAAACTGCCGAAAAATTCGTATGTGAATTTTGCATTAAAACATTTTCCTCTATTAAAAAACTAAATTATCATATGCGTAAGCACGATAAGAATTGTAAAACTTTCGTATGTCCTATAGAACAATGTGGCCGTACTTATTCCTCTAAACGCTCCTACGATACTCACTATAAGCAAAATCACTTGGATGCTGGAATGCCGTGTAGGATTTGCAAGAAAATATTTGCTTCAAAAAAATCGCTAGCGTTACATATGCATTATCATACGAAGAACTCTTATCAATGCAATCTGTGCGAGAAAATCTTTTTCCAAAAGTGCCACCTAACGCGACACACTGAAGTCATACATAATAACTTGAGATACATTTGCACCGAGCAGGATTGTGGTAAAGTATATAGAAATAGTGTTTCACTTAGAATACATCGTTATTCACATTCGACCATGCCGTTTAAATGCAAACATTGTGAGAAGCCGTATCCACAAAAGAGTAGGCTTGCAAATCATATTCTTCACAAACATGGTATAAAATATTCGCTAAATGATTTAGAGGAAATGCGTCAATTTAGAACTCTATACACACGACATTCTTATGTTAGACTACCAGGAGAGGAATATGATCACAATGTAGAGGAATCTACGGATACTAATGATACAGATGCTGATGTGGGCAAGTAG
- Protein Sequence
- MKLLLQTHAEQKVILNKILGQQNNSLDLHQSFPILSVEKLINLNSEITNENRHAYVEAMKSILKPCGVEKNLKYILSNNVVMAYNIDGVHGKKSLKGLENVYSALIESIPINEKFPGPAEDQLKRAIQLQKKRDADQNVAQFVIAEITSNEHLQTDAVSSSETADKFACKVCHKTFETTKYLNSHMNLHDENRKRFVCPVEQCGRVYTSKQSCHMHYKRSHLKERLPCKICKKTFTAEKSLVVHMRYHKNEFKYQCNLCDQQFVQNSYLTRHIKVKHNNFRYICTEPNCGKMYRNSGSLRVHRYTHTSMPFKCKHCEKQYAERCRLARHTFREHGIKYSQEDLDKMRQFTNSSTTQGGDYSHNVEENAGDQTATEPTTSSKTSEGNGKSLDTGTDHTQNVKNSEIKPIDVNMAPFVKTEIMSHDDCSQSYNIGSSEIGEKFTATKDTTSPKISEGNGKSLDTITDHTQNETNSEIITADEKNIASFVKTEITSNDHSQTYDEGSSAIEEKFTATTAATSPKTSADTGKEFDTVTDHTHSVKKSEINTADQTLTQFVKTEITSNASSEIEEKFTATKAPTSLKNSEINTADQNVEQFVITEITSNDHSQTYDVGSSETAEKFVCEFCIKTFSSIKKLNYHMRKHDKNCKTFVCPIEQCGRTYSSKRSYDTHYKQNHLDAGMPCRICKKIFASKKSLALHMHYHTKNSYQCNLCEKIFFQKCHLTRHTEVIHNNLRYICTEQDCGKVYRNSVSLRIHRYSHSTMPFKCKHCEKPYPQKSRLANHILHKHGIKYSLNDLEEMRQFRTLYTRHSYVRLPGEEYDHNVEESTDTNDTDADVGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01074717;
- 90% Identity
- -
- 80% Identity
- -