Nfer000278.1
Basic Information
- Insect
- Nowickia ferox
- Gene Symbol
- -
- Assembly
- GCA_936446695.1
- Location
- CAKZFO010000001.1:4824321-4833344[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.9e-05 0.0048 18.3 3.6 1 23 201 223 201 223 0.97 2 12 0.65 64 5.3 1.1 1 23 230 255 230 255 0.93 3 12 2.8e-05 0.0027 19.0 0.5 2 23 261 282 260 282 0.96 4 12 1.3e-06 0.00012 23.3 1.3 1 23 288 311 288 311 0.98 5 12 5.6e-05 0.0055 18.1 0.4 1 23 316 340 316 340 0.96 6 12 0.37 36 6.1 6.3 1 23 345 368 345 368 0.95 7 12 0.0015 0.14 13.6 2.5 1 23 645 667 645 667 0.98 8 12 0.0019 0.19 13.3 1.0 1 23 674 699 674 699 0.96 9 12 0.00018 0.017 16.5 0.7 2 23 705 726 704 726 0.96 10 12 0.00039 0.038 15.4 4.9 1 23 731 754 731 754 0.96 11 12 5.5e-05 0.0054 18.1 0.2 1 23 759 783 759 783 0.95 12 12 0.00062 0.061 14.8 4.1 1 23 788 811 788 811 0.96
Sequence Information
- Coding Sequence
- ATGATTGAAGATGGAGGATATGTTCTGAACAAATATTGGGGTAGCAAAAATAATGGGGGCTCGGTCATATGTATATTTGACACCTCTAGGGGACCTTTGTGGCTAGTTAGCGTGAAGCGGGaaaaattaattgaattggaTAGAGAAATCACTAAGGAAAACAGGAAGGCTTATgTAGAAGTTATGAAGTCTATACTTAAACCATGTGGAgttgaaaaaaacttaaagtatATACTAAGTAATAATGTTGTCATGGCCTGCAACATTGATGGGGTCCATGGCAAAAGAAGTCTCAAAGGACTGGAAAATGTATACTCCGCACTAATAGAATCCATACCAGTTAACGAAAAATTCCCTGGCTCGGCCGAAGACCAATTAAAAAGAGCTATTCAGCTGCAAAAAAAAAGGGAGATAAAGGCAAACTCTTTTAAGGCTGGAGTAAGCGAAGTTTCAGGTTCCCATAAAAGAGcaaaaaaagcaacaatttctCCAATAAATGGCAGTGCTGATCAAAATGTAGCACAATTTGTAATAACTGAAGTAACGTCAACTGAGCATTCGCAAACTGACGCTGTAGGCTCAAGTGAAACTACAGAAAAATTCGCCTGTAAAGTTTGTCATAAAACTTTTGAaaccacaaaatatttaaattcccATATGAATTTGCATGATGAAAATCGTAAACGTTTTATATGTCCCATAGAACAATGTGGCCGTGTCTATACCGCTAAACAATCCTGCGAAATGCACTATAAACGAAGTCACTTGAAGGAGAGATTGCCCTGCAAGATTTGCAAGAAGACATTTACCGCTGAAAAATCGTTAGTGGTACATATGCGTTATCATAAAAATGAATTCAAGTATCAGTGCAATCTGTGCGATCaacaatttgtacaaaatagCTACCTAACGCGACACATTAAAGTTAAACATAATAACTTCAGATACATTTGCACGGAGCCCAATTGTGGTAAAATGTATCGCAACAGTGGCTCGCTTAGAGTTCATCGTTATACCCATACGTCCATGCCGTTCAAATGCAAACATTGTGAGAAGCAGTATGCAGAAAGATGTAGGTTGGCACGCCACACTTTTCGTGAACATGGTATAAAATACTCCCAGGAAGATTTAGACAAAATGCGCCAGTTTACTCATTCATCCACCACTCAAGGAGCAGAATATAGTCATAATGTCGAAGAAAATGCGTGCGTTAAAACAGcaacaGAACCTGCAACATCTCCAAAAATATCAGAAGGGAATGGAAAATCGTTAGATAATGTAACCGATCACACTCAAAacgtaaaaaattcagaaataaacaCTGCTGATCAAGATATGTCACAATTTTTGAAAACTGAAATAACGTCAAATGATGATAATTCACAAAGTTACGATGGAGCTTCAAGCGAAATTGCGGAAAAATTTACAGCAACAAAAGCTTCAACTGCTCCAAAAACATCAGCTGGCACTGGAAAAGTGTTTGATGGGGTAACCGATCACACTCAGAacgtaaaaaattcagaaattaaTACTgctgatcaaaaaaatttaacgccatttgtaaaaactgaaataacgtCAAATGATCGTTCACGAACTTACGATGGAGATTCAAGTGaaattgatgaaaaatttacagCATCAAAAGCAGCAACTTTTCCAAAAACATCGGATCACGAAATTAGCACTGCTGACCAAACTTTGGCACAATTTGTAAAATCTGAAATAACATCAAATGAACATTCACAAACTTACGATGTAGGTTCAAGTGAAATTGAGGAAAAATTTACAGCAACTAAAGCTGCAACATctgtaaaaaatttggaaataaacACTGCTGATCAAAATGTAGCGCAATTTGTAATAACTGAAATAACGTCAAATGATCATTCACCAACTTGTGATGTAGGTTCAAGTGAAACTGCCGAAAAATTCGTATGtgaattttgcattaaaacattttcctctattaaaaaactaaactatcATATGCGTAAGCACGATAAGAATCATAAAACGTTCGTATGTCCTATAGAACAATGTGGCCGTACTTATTCCTCGAAACGCTCGTACGATACTCACTATAAGCAAAATCACTTGGATGATGGAATGCCGTGTAGGATTTGCAAGAAATTATTTGCTTCAAAAAAATCGCTAGCGTTACATATGCGTTATCATACGCAGAACTCTTATCAATGCAATCTGTGCGAGAAAATCTTTTTCCAGAAGTGCCACCTCACGCGTCACACTGAAGTTATACACAATAACTTGAGATACATTTGCACTGAGCCCGATTGTGGTAAAGTATATCGAAATAGTGTTTCGCTTAGAATTCATCGTTATTCACATTCGACCATGCCGTTTAAATGTAAACATTGTGAGAAGCCATATCCACAAAAGAGTAGGCTTGCAAATCATATTCTTCACAAACATGGTATAAAATATTCCCTAAATGATTTAGAGGAAATGCGTCAATTTAGAACTCTATACACACGACATTCTTATGTTAGACTTCCAGGAGAAGAATATGATCATAATGTTGAGGAATCTACGGATGATAACACAACTAATGATACCGATGCTGATGTGGGCAAGTAG
- Protein Sequence
- MIEDGGYVLNKYWGSKNNGGSVICIFDTSRGPLWLVSVKREKLIELDREITKENRKAYVEVMKSILKPCGVEKNLKYILSNNVVMACNIDGVHGKRSLKGLENVYSALIESIPVNEKFPGSAEDQLKRAIQLQKKREIKANSFKAGVSEVSGSHKRAKKATISPINGSADQNVAQFVITEVTSTEHSQTDAVGSSETTEKFACKVCHKTFETTKYLNSHMNLHDENRKRFICPIEQCGRVYTAKQSCEMHYKRSHLKERLPCKICKKTFTAEKSLVVHMRYHKNEFKYQCNLCDQQFVQNSYLTRHIKVKHNNFRYICTEPNCGKMYRNSGSLRVHRYTHTSMPFKCKHCEKQYAERCRLARHTFREHGIKYSQEDLDKMRQFTHSSTTQGAEYSHNVEENACVKTATEPATSPKISEGNGKSLDNVTDHTQNVKNSEINTADQDMSQFLKTEITSNDDNSQSYDGASSEIAEKFTATKASTAPKTSAGTGKVFDGVTDHTQNVKNSEINTADQKNLTPFVKTEITSNDRSRTYDGDSSEIDEKFTASKAATFPKTSDHEISTADQTLAQFVKSEITSNEHSQTYDVGSSEIEEKFTATKAATSVKNLEINTADQNVAQFVITEITSNDHSPTCDVGSSETAEKFVCEFCIKTFSSIKKLNYHMRKHDKNHKTFVCPIEQCGRTYSSKRSYDTHYKQNHLDDGMPCRICKKLFASKKSLALHMRYHTQNSYQCNLCEKIFFQKCHLTRHTEVIHNNLRYICTEPDCGKVYRNSVSLRIHRYSHSTMPFKCKHCEKPYPQKSRLANHILHKHGIKYSLNDLEEMRQFRTLYTRHSYVRLPGEEYDHNVEESTDDNTTNDTDADVGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01399706;
- 90% Identity
- -
- 80% Identity
- -