Tgro042187.2
Basic Information
- Insect
- Tachina grossa
- Gene Symbol
- -
- Assembly
- GCA_949987645.1
- Location
- OX465278.1:52918833-52929657[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.8 4.8e+02 3.1 0.9 2 19 243 260 242 265 0.88 2 10 3.8 4.9e+02 3.0 0.2 6 23 274 291 274 291 0.96 3 10 5.9e-05 0.0076 18.2 2.4 1 23 297 320 297 320 0.97 4 10 0.21 27 7.0 1.7 3 23 327 346 325 346 0.93 5 10 0.00031 0.039 15.9 0.2 2 23 352 374 351 374 0.94 6 10 0.23 29 6.9 1.6 1 23 379 400 379 400 0.94 7 10 0.00051 0.066 15.2 1.6 2 23 409 430 408 431 0.94 8 10 6.7e-05 0.0086 18.0 0.4 1 20 440 459 440 463 0.94 9 10 4.1e-06 0.00053 21.8 0.6 2 23 470 491 470 491 0.97 10 10 0.0014 0.18 13.8 1.4 3 23 499 520 498 520 0.96
Sequence Information
- Coding Sequence
- atgaaaaattgtctTCTGTGCTTGAAAATTAAtgagaattatcaaaattatataatttttaactcttGTGAATGGCAGGATCTAAATATACAATGTATcattgaaaaacatttttggaaAATGGAAAATCTAAACAGTCTCTCTTATATATGCATAACCTGTTGGCAGGAATTATATAATTTCCATAACTTTTACTCAGAAATTAAAAAGGCACACGcagatttaaatattttaacggGCACGGAAATATTCCTGGAAGACGATTTGGAAAAGATTTCTAATGATGGTAAAAATAACTCTGAACTCGAACCAGAGATTTTATTTATCAGGGAGGAAAATTCtttagaaatttttgaaaaagaagaCGTGGAGTCAGTAGTTTGTACTAAAGTAAATACTCGGCGTATATGCTCTGAAAAGAGaagtgcaaataaaaaaaaacatcttgtaaaaaataatttgaatagAAGATCTAAAAACGAAGATGGTGAGaacgaaataaataatttaaagatTGATAAAAAACTAGATAAAATTGATAAATTGGAAAATATAGAAAATGGCCATAAAGAAGCCGAAATCCAAGGTGTGGAAGGAAATTGTAACGATCAGAATGATGGTAGCTTTGTAATTGATGATGATAATTCGCCCAATGCTGTTGAATCACCAAAATTAGATGAACAATTAGAAGAAAGAGATAAATTCGTGgccgaaaattttcaaatcacCTGTTGGGTTTGTAAAATTCCATTGGCTACATTTTCCACAATGCGTAAGCATTGCAAAGAGGAACACAATAAACGTGgatatgttatttgttgtaATGCTAAGTTTTATACTCGTGCAGAAATATTCGATCATATTAAGTTTCACCAAAATCCGGatttatttaaatgcaaatattgtgataaaaaattaaatagacgttttgCTCTAAAGCTGCACATAAAAAATGTTCACGAACAGAGGGATATTGATTGTGATATTTgcggaaaaaaattaacaaagacaAGCATTAAACACCATAGATCATTACATGATGACAAATCAGTGCCTTGCAAAGAATGTGAAAAAACCTTTAACTCTGAATTCGCCTACCAAAAGCATGTGAAGGGTgttcacttaaaaaaaactcatgTTTGCGCTCTATGTGGCAAATCTATAGCGAGCCACAGACTCAAACGTCACATGTTAGAGCATGAAGGAAAAGATAAACTTATGGTAAGCTGTGAAGTTTGCGGTCGCCGCTTGTCCGATATAGGCTGCTTAAAGCGACATATGGCTTCGCATCATCCGCCGAAAGAAGCTAAAGCTGAATTCAATTGTCCCAAGTGCACAAAAGTATTTGGAAGTAGTTCAACTCTTAAGGAACACATTTGGGTTACACACGAAAATAGATACGAAAGAAGGTGTAAAATTTGTGGGAAAACTTTAAAAAGACCCGGAACACTAAAGgatCATATGGCTAGGCATATTGGTAGACCTTTGCGCGCTTGTGGTTTTTGCCCTAGAACATTTTATTCAAGTGGTAATATGCATGCACATCGCAAAAGAGAGCATCCAACAGAATGGGCTAAatctataaaagaaaaattttctggaaATTTGCCCGAAAAATATGTTGCAATAGCATCAAGACATCAATAA
- Protein Sequence
- MKNCLLCLKINENYQNYIIFNSCEWQDLNIQCIIEKHFWKMENLNSLSYICITCWQELYNFHNFYSEIKKAHADLNILTGTEIFLEDDLEKISNDGKNNSELEPEILFIREENSLEIFEKEDVESVVCTKVNTRRICSEKRSANKKKHLVKNNLNRRSKNEDGENEINNLKIDKKLDKIDKLENIENGHKEAEIQGVEGNCNDQNDGSFVIDDDNSPNAVESPKLDEQLEERDKFVAENFQITCWVCKIPLATFSTMRKHCKEEHNKRGYVICCNAKFYTRAEIFDHIKFHQNPDLFKCKYCDKKLNRRFALKLHIKNVHEQRDIDCDICGKKLTKTSIKHHRSLHDDKSVPCKECEKTFNSEFAYQKHVKGVHLKKTHVCALCGKSIASHRLKRHMLEHEGKDKLMVSCEVCGRRLSDIGCLKRHMASHHPPKEAKAEFNCPKCTKVFGSSSTLKEHIWVTHENRYERRCKICGKTLKRPGTLKDHMARHIGRPLRACGFCPRTFYSSGNMHAHRKREHPTEWAKSIKEKFSGNLPEKYVAIASRHQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01074881;
- 90% Identity
- iTF_01397900;
- 80% Identity
- -