Tfer040269.1
Basic Information
- Insect
- Tachina fera
- Gene Symbol
- -
- Assembly
- GCA_905220375.1
- Location
- LR999967.1:89927259-89931843[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 3.7 4.3e+02 3.0 0.2 6 23 276 293 276 293 0.96 2 9 5.8e-05 0.0067 18.2 2.4 1 23 299 322 299 322 0.97 3 9 0.21 24 7.0 1.7 3 23 329 348 327 348 0.93 4 9 4.1e-05 0.0047 18.6 0.3 2 23 354 376 353 376 0.94 5 9 0.027 3.1 9.8 2.0 1 23 381 402 381 402 0.96 6 9 0.0005 0.058 15.2 1.6 2 23 411 432 410 433 0.94 7 9 6.6e-05 0.0076 18.0 0.4 1 20 442 461 442 465 0.94 8 9 4e-06 0.00047 21.8 0.6 2 23 472 493 472 493 0.97 9 9 0.0014 0.16 13.8 1.4 3 23 501 522 500 522 0.96
Sequence Information
- Coding Sequence
- atgaaaaattgtcttCTGTGcttgaaaattaatgaaaattatcaaaattatataatttttaattcttgtgAATGGCAGGATCTAAATATACAATGTATcattgaaaaacatttttggaaAATGGAAAATCTAAATGATCTCTCTTATATATGCAAAACCTGTTGGCAGGAATTatataatttccataacttttattcagaaataaaaaaggcacatgcatatttaaatattttaacggAGACGGAAGTATTTCTGGAAGACGAATTGGAAAAGATTTCTAATGATGGTAAAAATAACTCTGAACTCGAACCAGAACCGGAGATTTTATTTATCAGGGAGGAAAATTCTttggaaatatttgaaaaagaagACGTAGAGTCAGTAGTTTGTACTGAAGAAAATACTCGGCGTATATGCTCTGAAATGAGAagtgcaaataaaaaacaacgtcttgcaaaaaataatttaagtagaAGATCTAAAAACGAAGACGGAGACGATGAAATAAACATGTTAAAGGCTGATACAAATCTAGATAAAATTGATAAATCGGAAAATATAGAAAAAGACCCTGAAGAAGACGAAATCGAAGATGTGGAAGGAAATTCTAACGATCAGAATGATGGTAGCCTTGCAATTGATGATGATAATTCGCCCAATGCTGGTGAATCACCAAAATTAGATGAACAATTAGAGGAAAGAGATAAATTCGtggccgaaaattttcaaatcacatGTTGTGTATGTAAAATTCCATTACCTACATTTTCCACAATGCGTAAGCATTGCAAAGAGCAACACAATAAACGAGGatatgttatttgttgtaatGCTAAGTTTTATACTCGTGCAGAAATATTCGATCATATTAAGTTTCACCAAAATCCGgatatatttaaatgtaaatattgtgataaaaaattaaatagacgtTTTGCCCTAAAGCTGCACATAAAAAATGTCCACGAACAGAGGGATATTGATTGTGATATTTGCggcaaaaaattaacaaaaacaagcaTTAAACACCATAGATCATTACATGATGACAAATCAGTGCCTTGCAAAGAATGTGAAAAAACCTTTAACTCTGAATTCGCCTACCAAAAGCATATGAAGGGtgttcacttaaaaaaaactcatgTTTGCGCTCTATGTGGCAAATCTATATCAAGTCACAGACTCAATCGTCACATGTTAGAGCATGAAGGAAAAGATAAACTTATGGTAAGCTGTGAAGTTTGCGGTCGCCGCTTGTCCGATATAGGCTGCTTAAAGCGACATATGGCTTCGCATCATCCGCCGAAAGAAGCTAAAGCTGAATTCAATTGTCCTAAGTGCACAAAAGTATTTGGAAGTAGTTCAACTCTTAAGGAACACATTTGGGTAACACACGAGAATAGATACGAAAGAAGGTGTAAAATTTGTGGGAAAACTTTGAAAAGGCCCGGAACACTAAaggatCATATGGCTAGGCATATTGGTAGACCTTTGCGTGCTTGCGGTTTTTGTCcaagaacattttattcaaGTGGTAATATGCATGCACATCGCAAAAGAGAGCATCCAATAGAATGGACTAAatctataaaagaaaaattttctggaAATTTCCCCGAAAAATATGTTACAAAAGCAGCAAGACATCAATAA
- Protein Sequence
- MKNCLLCLKINENYQNYIIFNSCEWQDLNIQCIIEKHFWKMENLNDLSYICKTCWQELYNFHNFYSEIKKAHAYLNILTETEVFLEDELEKISNDGKNNSELEPEPEILFIREENSLEIFEKEDVESVVCTEENTRRICSEMRSANKKQRLAKNNLSRRSKNEDGDDEINMLKADTNLDKIDKSENIEKDPEEDEIEDVEGNSNDQNDGSLAIDDDNSPNAGESPKLDEQLEERDKFVAENFQITCCVCKIPLPTFSTMRKHCKEQHNKRGYVICCNAKFYTRAEIFDHIKFHQNPDIFKCKYCDKKLNRRFALKLHIKNVHEQRDIDCDICGKKLTKTSIKHHRSLHDDKSVPCKECEKTFNSEFAYQKHMKGVHLKKTHVCALCGKSISSHRLNRHMLEHEGKDKLMVSCEVCGRRLSDIGCLKRHMASHHPPKEAKAEFNCPKCTKVFGSSSTLKEHIWVTHENRYERRCKICGKTLKRPGTLKDHMARHIGRPLRACGFCPRTFYSSGNMHAHRKREHPIEWTKSIKEKFSGNFPEKYVTKAARHQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01074881;
- 90% Identity
- iTF_01398913; iTF_01074881; iTF_01399831;
- 80% Identity
- -