Tgro039495.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tachina grossa
Gene Symbol
GIP
Assembly
GCA_949987645.1
Location
OX465277.1:148676435-148681858[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.039 5 9.3 1.7 2 23 134 156 133 156 0.96
2 21 0.083 11 8.3 2.6 2 23 216 237 215 237 0.96
3 21 0.065 8.4 8.6 1.9 1 23 314 337 314 337 0.97
4 21 0.03 3.8 9.7 2.3 2 23 345 366 344 366 0.97
5 21 0.0086 1.1 11.4 0.2 2 20 426 444 425 447 0.94
6 21 0.0012 0.16 14.0 1.5 1 23 516 539 516 539 0.92
7 21 0.0031 0.4 12.8 0.5 1 22 546 567 546 567 0.96
8 21 5.3 6.8e+02 2.6 0.6 2 21 579 598 578 599 0.90
9 21 0.0034 0.43 12.7 3.0 2 23 641 662 640 662 0.94
10 21 0.033 4.2 9.5 0.2 2 20 689 707 688 709 0.92
11 21 0.0013 0.17 14.0 5.6 1 23 760 783 760 783 0.97
12 21 0.0049 0.62 12.1 0.9 1 23 820 843 820 843 0.97
13 21 0.81 1e+02 5.2 2.1 2 23 898 918 896 918 0.91
14 21 8.8e-06 0.0011 20.8 1.2 1 23 924 946 924 946 0.98
15 21 0.0017 0.22 13.6 2.3 1 23 952 974 952 974 0.98
16 21 0.00046 0.06 15.4 4.7 1 21 980 1000 980 1002 0.96
17 21 0.0038 0.48 12.5 0.1 3 23 1031 1051 1030 1051 0.99
18 21 1.4e-06 0.00018 23.3 2.6 1 23 1057 1079 1057 1079 0.99
19 21 4.3e-06 0.00056 21.7 4.2 1 23 1085 1107 1085 1107 0.99
20 21 4.3e-05 0.0055 18.6 1.3 1 23 1113 1135 1113 1135 0.94
21 21 0.032 4.1 9.6 2.1 1 21 1141 1161 1141 1165 0.89

Sequence Information

Coding Sequence
ATGGAAAGCTGCGATGCAAGAAGAGATAAATTCCCACAAAGAAAATCAAACTTGGGATTTGGTTCAAGCTCCCCCCGATGCGAATATTTTAGCTGCAAATGGACATATAAGATTAAACGTGGTAATGATGGTAAAGTCCAAAGATTCAAAGCTCGTTTAGCTGCCCAGGGTTTCACCCAGAAATATGGACATGATTATGATGAGGTATTTGCGCCAACTTTTCGTATTTTGTTGTCTGTTGCTGCTGCTAGAAAAATGCATGTAGAACACATGGATATCTGGTCCTCATCCTCCAGTAGTGCAAGTGAACATCACCTGCCCACTAGCCAGCCATTCGAAAAGAAAACTGAAGAACAATTCTCCAAATATTTTCCAATCGAAAAAGTCAACAATCATTTAGTGTGTGGGGTATGcaagaaattattttcttcGCCGACAACTTGTCGCAGGCATATAATCACGAGGCACTACCAAGGTAAATCGTATATATGTGCATTTTGCGATCAGCATGCGCaatgtaaaaattacttaattggACATCTTAAACGTAAACATCCAGACGAATCATTTGAATCCAATGCGAAACAATTAGGTCGCATGTTTGGGGAACGTCTGTATAGCAAACCTCTTCTATTACCACGAATAGAATGTAAGCTGTGTTGTACTACttttgtaactaaaaaaaaacttattcagCATCTAGAGAGCCATAGTGAGGTTAGTACTCTAGACAGTTTACAATTAAGCAGTGATATAATCAAGCGTTGGTTTCCATATAAGAGAAATTTGCAAGTTATAAAAACAATGATATGTAAAGACATTCGAGAAAAAAACTGGATCAAAtattatacaattttaaatgatttttcctatGAAATATCCATTAGTGATACGGATGCAGAAGATTTGGAAAAAGAAACAGAAGCACCTGCCAGCAAATATAAATGCGAATTgtgtgcaaaaaattttttgcataaatatcAAGTGTTTGCTCATTTGAGAGAGGATCATTTGAACGAAGAAATTCCTTGGAAATGCAGCCATTGCAATCTGGAATTTATAtcaataaaaatgtatgaacaaCATAAACAAACCCACTGTCTGTCTAAACATAAAATATTGCTTTGTCCCAATTGCAATGGCAAGTTTGTCTggcacaaaaatataaaaaaacacaagtGTGTTACGAAAATACTGGATATTGAGAAACCTcttaatgttaaaataaatgagAGTTACAATGATGAAGTGTGTTCATCGCCAAAAACTATCATAAGATGTGGTCTTTGTGATATGACCTTTGAAAAACTGCGCGATTTACGACAACACATGCCTTTGCACGCCGATGGCAAAACTGGAGTTGACTTTAATGGTTGCATTTATGTAAATCAATTTGAAACTTCATCCAGCAATCGCGAGTTGTTGGAACAGAagattaaaaatgcatttacgAAACGTCAAATAAGTCAACTGTATCAAGCCATCGATAAGTACGGCAAAGAAATGGATATTTCAGATTCGGATAGCGATGAAGATGAAAAAAGCTATTTGTGCGAACTCTGCAATGAAACGTTTAAAAAACGAAAACTTCTGTTGAAACATCAAAGTGAACAACACAGGGATATTTTAATGCCTTTCACTTGCAAGGAATGTAAGATGCAGTATGTTAGTATTGATTTGTTACAACAACATATGAAAAGAGAATGTTGGAATGAACATCGACGAGTAGCCAAACAATGTGATTGTTGTAAAGAGCGTTTTATATGGCCGGATAACCTGCTGAGACATAGAGAAATGCAGcgatacataaatattgaaaattcgcAAACGGATAACGTGTGTCGTACCCAGGCACAGAAAACAATAATAGCTTCATCTATATCCAACTCTGATGTGACAAGTGCCAATATCCAAATTTGTTATTGCTTTTTATGTCCTAAAACTTTCGCAAATAATGATCAGTTCAATGATCATTTCATCCGCCATCGTCTCGCATCATCCGCCATCAAAATTGCTGCAAGCACAATACATTCTGTATGGTGGCCAAACGGGAGAAAGacaataaaatgcaaaatatgtaACCAAGTATTTTTAAGAAAGGCCGAATTAAATGAAcatttttcttctaaaaattcgaaaaacttGTGTGGCGGAAGGCAACATTCAGTGGCAAACTACTCGATTACTAATCAAATGGGGTTTGAGTTACATTTAGAGCTGGATTCGGAAACGGAAACTGAAAGCATCGAAAATGAAGAAAATGAACAGACATTATCATATAAATGTTGCATGTGTAGTAAATCATTTAAGcgaaaatatcaaataattcaACATCAAACCTCGATGCACAATTATAAATTGTTGGAACTGAAATGCGAACGTTGCTTTTTTAGAACTGTATCACAGAAAGTTTTAGATTATCATAAAGTAAGCCAGTGTTTTAATGTTGAGAAAATGTACCAATGCGATCAGTGTAACTTCAAATTTATGTGGCAAGAGAACCTCGAGAAGCATATTTCGATATTTCATACTTCAGACGTTTTCGTCAAAGCACTGCATGCGGCTAATATAACGAGCAATACTAATGCTCAATGCCTTGAATCAAAAGAAGCTTCCCAGAATGATTTGTCGTCAGCATTACATCAAAACGATTCCGATGCAATGGACGGCATTCAATCTAAAGATAAATGTAAATGTCTCATTTGTGGAATTTACATtaccaaaaataattattcagaACATATTAGGAGACACGAATGTGACAAATCTTACAAATGCGATTTTTGCGAAATGGTCTTTATAACAAATTCGTCATTAAAGAAGCATCAGGACATGCATACGGGAGAACGTCCTTTCAAATGTACGTTATGCCGGAAATCATTCAAGCTTCAAAAAGGTCTAGATGTCCATAAACGTTTACACACCGAAAAACTACCATACAAATGCACAATTTGTTCGAAATCATTTTTACGATCGGCACATCTGACTGCTCATATGCGATGTCATTCGGGTTCAAAGCTGACGCTAGACAAGAAGTCGGACTCAACTGATGCTACTCAAAATGCACAAGGGAATAGAAAGACGAACTTATGTCCTATTTGTGGTGTCTATTTGTCATACAAAACAAGTCTTTCATTACATATTAGAAGTCATACGGATGAAAAGCCATTCAAGTGCGATCTTTGTGATAAAAGATTTAACAGATCAACCGATTTAAATCTTCATCGACGCACACACTTTACTGAACGTCCATTTAAATGTACAACTTGCGAGAAATCTTTTGTCCATAGAGGCAAATTAAAAACTCACATGCGCATTCACACTGGCGAGCGTCCATATCAGTGCACGATTTGTCAGAAAAAATTTACGAGTTCGGGCACTTTGAAGGAACATTCGCTTGATCATACTGGCAAGAAACCATTTATATGTGAGATTTGCAATCGAGCCTTTAAATGTTCCTGGTATCTCAAAAAGCATCGTGTCAGAAGTGGCCATCATATAGACAATAACTGA
Protein Sequence
MESCDARRDKFPQRKSNLGFGSSSPRCEYFSCKWTYKIKRGNDGKVQRFKARLAAQGFTQKYGHDYDEVFAPTFRILLSVAAARKMHVEHMDIWSSSSSSASEHHLPTSQPFEKKTEEQFSKYFPIEKVNNHLVCGVCKKLFSSPTTCRRHIITRHYQGKSYICAFCDQHAQCKNYLIGHLKRKHPDESFESNAKQLGRMFGERLYSKPLLLPRIECKLCCTTFVTKKKLIQHLESHSEVSTLDSLQLSSDIIKRWFPYKRNLQVIKTMICKDIREKNWIKYYTILNDFSYEISISDTDAEDLEKETEAPASKYKCELCAKNFLHKYQVFAHLREDHLNEEIPWKCSHCNLEFISIKMYEQHKQTHCLSKHKILLCPNCNGKFVWHKNIKKHKCVTKILDIEKPLNVKINESYNDEVCSSPKTIIRCGLCDMTFEKLRDLRQHMPLHADGKTGVDFNGCIYVNQFETSSSNRELLEQKIKNAFTKRQISQLYQAIDKYGKEMDISDSDSDEDEKSYLCELCNETFKKRKLLLKHQSEQHRDILMPFTCKECKMQYVSIDLLQQHMKRECWNEHRRVAKQCDCCKERFIWPDNLLRHREMQRYINIENSQTDNVCRTQAQKTIIASSISNSDVTSANIQICYCFLCPKTFANNDQFNDHFIRHRLASSAIKIAASTIHSVWWPNGRKTIKCKICNQVFLRKAELNEHFSSKNSKNLCGGRQHSVANYSITNQMGFELHLELDSETETESIENEENEQTLSYKCCMCSKSFKRKYQIIQHQTSMHNYKLLELKCERCFFRTVSQKVLDYHKVSQCFNVEKMYQCDQCNFKFMWQENLEKHISIFHTSDVFVKALHAANITSNTNAQCLESKEASQNDLSSALHQNDSDAMDGIQSKDKCKCLICGIYITKNNYSEHIRRHECDKSYKCDFCEMVFITNSSLKKHQDMHTGERPFKCTLCRKSFKLQKGLDVHKRLHTEKLPYKCTICSKSFLRSAHLTAHMRCHSGSKLTLDKKSDSTDATQNAQGNRKTNLCPICGVYLSYKTSLSLHIRSHTDEKPFKCDLCDKRFNRSTDLNLHRRTHFTERPFKCTTCEKSFVHRGKLKTHMRIHTGERPYQCTICQKKFTSSGTLKEHSLDHTGKKPFICEICNRAFKCSWYLKKHRVRSGHHIDNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01074740;
90% Identity
-
80% Identity
-