Tgro032648.1
Basic Information
- Insect
- Tachina grossa
- Gene Symbol
- -
- Assembly
- GCA_949987645.1
- Location
- OX465277.1:8317292-8321409[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0011 0.14 14.2 4.4 1 23 207 230 207 230 0.91 2 16 0.22 28 7.0 2.2 1 17 243 259 243 265 0.90 3 16 8.1e-05 0.01 17.7 1.2 3 23 270 290 268 290 0.96 4 16 3.7e-05 0.0048 18.8 1.4 1 23 296 318 296 318 0.98 5 16 0.00014 0.018 17.0 1.3 1 23 324 346 324 346 0.97 6 16 0.0011 0.14 14.2 3.2 2 23 353 374 353 374 0.97 7 16 0.00027 0.035 16.1 0.8 1 23 380 402 380 402 0.99 8 16 3e-07 3.8e-05 25.4 0.7 1 23 408 430 408 430 0.98 9 16 0.0005 0.064 15.3 2.9 1 21 688 708 688 711 0.89 10 16 0.0028 0.36 12.9 2.4 1 23 724 746 724 746 0.97 11 16 3e-06 0.00039 22.2 0.2 2 23 750 771 749 771 0.96 12 16 6.2e-06 0.00079 21.3 2.7 1 23 777 799 777 799 0.98 13 16 0.00036 0.046 15.7 1.2 1 23 805 827 805 827 0.97 14 16 0.0023 0.29 13.2 1.9 2 23 834 855 834 855 0.91 15 16 0.0045 0.57 12.3 1.0 1 23 861 883 861 883 0.98 16 16 0.00024 0.031 16.2 2.2 1 23 889 911 889 911 0.97
Sequence Information
- Coding Sequence
- ATGTTAAAAGTATCCCAACCTCCTATTGCTTTTCACAACTTCAAATGTGGCGAGGTTTTTTGTATTTCACCGATAGTTTACAATGTTACTTGCAGTTTGTGTGCTACCAATATGCATCTCGACCAGTTCCCCGTCCACTTTCAGACGCAGCATCTTGCATTGGCCGAAGAGAGTATTAACTTGGAGGAATTGGAGATCAAGTGCAAATCTGAACTGGCTAAGGATGCCAACCTAATAgataacataataataaaggAGGAGGATCCCATAGATGATCCTATTAAACAAGAAGAATTTGAATATGTTGAGGATGATAAAAGTTTACAGAACATCTTAGGAGACACAGAAAAGGCAAGCAATAATACAGAAGTGGAAGTTGATATGAAGCGGAACACTAGAAACTCGAAGAAAATGCATATATCAAGTACTCGCAAGGAAATGAAAAGAGACATCGGagggaataaaattaaaatagatgtggaaataaatgaaaaagatTTGAAAGCCGAATATGATAGTGATGATGTTGATATGGACAGGGATTGGTCGGCCGAAGATAAAACGTCGGACACAGATtgCGAACCTGACGACAAAGACTACCTTAAAGATGATGATGCATTTCCCTGTCACACCTGCAAGCGTTCGTATTCTTCAAAGCGCAGTCTGCAAAAGCACAACTACAGTGTCCATAATCCAAATAAACCACCAAGAAAATCTAAACCTGGACATCAATGTATGGATTGTAGCGAGGTTTTTCGAACAGCTCGAGAGCTGAACTGCCATAAATGGAAACACACCggcatattttgtaatatatgtgGTAAATCTTTTACAAAGACTGGAAACATGAATACTCATAAAATACGTCATACGGGCATAAAGGCTCATAAGTGTACAGAATGTGGTAAAGATTTTTTCTTGGCTAAAGAACTGAAAGCCCATATGATTCGTCATACAGGTATCATGCCTCACATATGCGAAATATGTGGCAAACGCTGCAGAGATGGTGGAGTGCTAACTGCCCATATGCGAAGACACACCGGTGAAAGGCCAGCTAAATGCGATGTTTGTGGAAAgtgtttcttttcttttcatgATCTCAATGTGCATGCCGTTACACACAGCAGTGAAAGGCCATTTAAGTGTGATATCTGCGGTTCAACATTCCAGCTCAAAAAAGCTTTGCGTGTTCACAAACGTATACATACAAAAGATCGTAATCATGTTTGTAAAATATGTGGCAAAGGTTTTGCTCAATCTAGTGGCCTTAACTCACATATGAGTACGCATGATGCTGCAATTGAGAAGCCAACAATTGTGACAGCCCAGCAAATGCTTGCTTCTGTTATGCCGGACAGTTCAAGTTCACACACGGAAAACCAAAGTGTATTGAGTACAGCTGATTGTATAATTTCAAGTAACGCCGAGATGTTAAAAGTATCCCAACCTCCTGCTACTGCTTTTCACAACTTTAAATGTGGCGAGGTTTTTTGTATTTCACCGTTAGTTTACAATATTACTTGCAGCTTGTGTGCTACAAAAATGCATCTCGACCAGTTCCCTAGCCACTTTCAGACGCAGCATCTTGCATTGGCCGAAGAGAGTATTAACTTGGAGGAATTGGAGCTCAAGTGCAAATCTAAACTGGTCAAGGATGCCAACCTAATAgataacataataataaaggAGGAGGATCCCATAGATGATCCTATTAAACAAGAAGAATTTGAATATGTTGAGGATGATAAAAGTTTCCAGAATATCTTAGGGGATACAGAAAAGGCAAGCAATAAGGCAGAAAATGATAAACGACTAGAGCCAGCAGTGCAAACTATGAAGCGGAACACTAGAAACTCGAGGAAAAGGCAAATATCAAGTACTCTCAAGGAAATAAAAGGTGACATCGAAGAGAATAAAATAGATGTGgagataaataaaatagatttgaaaGCGGAATACGATAGTGATGATGTCAATATGGATAGGGATTGGTCGGCGGAAGATAAGATTTCGGACACAGATtctgGACCTGACGACAAAGACTACCTTAAAGATGCTCTATTTCCTTGTCACATCTGCAAGCGTTCGTATACTACAAAGCAAGGTTTGCGAAAGCACAACTACAATATCCATAATCCAAATAAACCaccaaaaaaatctaaatctGAACATAAATGTAATTATTGTAGCGAGATTTTTCAATCAGCACAAGATTTGCGCGACCATAAACTGAAACACACCGATACAGTTTGCGATATATGTGGTAAATCGTTTACAAAGCCTGGAAACCTGATGATTCATAAAATACGTCATACGGGCATAAAGGCTCATAAGTGTAACGAATGTGATAAAGATTTTTTCACATCTAAAGAACTGAAAGCTCATATGATTCGTCATACAGGTCTCATGCCTCATATATGCGAAATATGTGGCAAACGCTGTAGAGATGGTGGGGTGCTATCTGCCCATATGAGAAGACACACAGGCGAGAGGCCAGCCAAATGCAATGTTTGTGGAAAGTGTTTTTTTTCTATCCATGATCTCAATGTGCATGCTGTTGCACACAGCAGTGAAAGACCTTTCAAGTGTGATATCTGCATTGCAACGTTCCAACGCAAAAAAGCTTTGCGCTTGCACAAACGTATACACGCAGATGATCGTAAGCATATATGTAAAATATGTGGTAAAGGTTTTGTTCAAACGGCTGGTCTTAATTGTCATATGCGTACACATGATGCTGCCTTTGAGAAGTCAATAATTGAGACAACCCAAAAAATGCTTGTTCCTGTCATGCCAGACAGTTCAAGTTCACTCACGGAAAACCAAATTGTATTGAGTACAGCTGATTGCATAACTTCAAATAACAACGAGGTTAGTATGGAACAGTATatgatttaa
- Protein Sequence
- MLKVSQPPIAFHNFKCGEVFCISPIVYNVTCSLCATNMHLDQFPVHFQTQHLALAEESINLEELEIKCKSELAKDANLIDNIIIKEEDPIDDPIKQEEFEYVEDDKSLQNILGDTEKASNNTEVEVDMKRNTRNSKKMHISSTRKEMKRDIGGNKIKIDVEINEKDLKAEYDSDDVDMDRDWSAEDKTSDTDCEPDDKDYLKDDDAFPCHTCKRSYSSKRSLQKHNYSVHNPNKPPRKSKPGHQCMDCSEVFRTARELNCHKWKHTGIFCNICGKSFTKTGNMNTHKIRHTGIKAHKCTECGKDFFLAKELKAHMIRHTGIMPHICEICGKRCRDGGVLTAHMRRHTGERPAKCDVCGKCFFSFHDLNVHAVTHSSERPFKCDICGSTFQLKKALRVHKRIHTKDRNHVCKICGKGFAQSSGLNSHMSTHDAAIEKPTIVTAQQMLASVMPDSSSSHTENQSVLSTADCIISSNAEMLKVSQPPATAFHNFKCGEVFCISPLVYNITCSLCATKMHLDQFPSHFQTQHLALAEESINLEELELKCKSKLVKDANLIDNIIIKEEDPIDDPIKQEEFEYVEDDKSFQNILGDTEKASNKAENDKRLEPAVQTMKRNTRNSRKRQISSTLKEIKGDIEENKIDVEINKIDLKAEYDSDDVNMDRDWSAEDKISDTDSGPDDKDYLKDALFPCHICKRSYTTKQGLRKHNYNIHNPNKPPKKSKSEHKCNYCSEIFQSAQDLRDHKLKHTDTVCDICGKSFTKPGNLMIHKIRHTGIKAHKCNECDKDFFTSKELKAHMIRHTGLMPHICEICGKRCRDGGVLSAHMRRHTGERPAKCNVCGKCFFSIHDLNVHAVAHSSERPFKCDICIATFQRKKALRLHKRIHADDRKHICKICGKGFVQTAGLNCHMRTHDAAFEKSIIETTQKMLVPVMPDSSSSLTENQIVLSTADCITSNNNEVSMEQYMI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01074692;
- 90% Identity
- -
- 80% Identity
- -