Tgro031114.1
Basic Information
- Insect
- Tachina grossa
- Gene Symbol
- -
- Assembly
- GCA_949987645.1
- Location
- OX465276.1:141570020-141570622[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-09 8.7e-06 26.9 0.0 9 40 23 53 17 58 0.90 2 2 3.4 7.7e+03 -1.7 0.0 33 43 132 142 132 142 0.86
Sequence Information
- Coding Sequence
- AtgccaagaaataaaaatagaggTCTTAAAAAGCCAATTATAAATATAGCAAACATATCATTGGGAATAGAGGATATCGAAAGAGGAATGACTATTGAAACTGCAGCCAAAAAGCACACAATAGCAAAAACAACTTTATGGAGACATTACAAAAGGCATCAACTATCCCTCCAGCAAACGTGTGCTTACGTTAAAAGCACAGAATGTGATTACAAACGAATATTTACAGATGAAGAGGAAATATTTTTGGCTGAATATATCAAAACACTTGCGAAACTGCATTATGAACTCAACAACAGCGATGTAAGGAAATTTGTCTATCTCattgcacaaaaaaataacaaatgtaTGCCAAAAACTTGGAGAGAAGAGAAATTGGCTAGTATCGATTGGCTGAGTAGATTCGTTAAACGACATCCAAGCGTAccattaaaacaaacaaatgatCTTTCAAAAATTATAACTGCGACAAGCTCCCAAAATAAGTTTGATTTCAATATAATTCCTAGTAATTTGAATGATTCAATATCATTGTATCTGTTTACGCAAATTTATCATCTTATGAAACTGACAAGCACCATCACGGCGAATGAAAAAAAGTAG
- Protein Sequence
- MPRNKNRGLKKPIINIANISLGIEDIERGMTIETAAKKHTIAKTTLWRHYKRHQLSLQQTCAYVKSTECDYKRIFTDEEEIFLAEYIKTLAKLHYELNNSDVRKFVYLIAQKNNKCMPKTWREEKLASIDWLSRFVKRHPSVPLKQTNDLSKIITATSSQNKFDFNIIPSNLNDSISLYLFTQIYHLMKLTSTITANEKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01074398;
- 90% Identity
- -
- 80% Identity
- -