Nfer007371.1
Basic Information
- Insect
- Nowickia ferox
- Gene Symbol
- -
- Assembly
- GCA_936446695.1
- Location
- CAKZFO010000052.1:1602734-1603336[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-11 7.6e-08 33.0 0.0 5 40 19 53 17 58 0.94 2 2 2.8 5.3e+03 -1.7 0.0 33 43 132 142 132 142 0.86
Sequence Information
- Coding Sequence
- ATGCCAAGAGACAAAAATAGAGGTATTAAAAGGCCAATTATAAATATATCCAACATATCATTGGCAATAGAAGACATCAAAAGAGGAATGACTATTGAAACTGCAGCCAAAAAGCACACAATAGCAAAAACAACTTTGTGGAGGCATTACAAAAGGCATCAACTATCCCTCCAGCAAACTTGTATTTACGTTAAAAGCATAGAAAGTGATTACAAACGAATATTTACACATGAAGAGGAAATATTTTTGGCGGAATATATCAAAACACTTGCCAAACTGCACTATGAACTCAATAAAAACGATGTAAGGAAATTTGTCTATCtcattgcacaaaaaaataacaaatgtaTGCCAAAAACTTGGAGAGAAGAGAAATTGGCTAGTATGGATTGGCTCAGTAGATTCGTTAAACGACATCCAAGCGTaccattaaaacaaacaaatgatCTTTCAAAAATTGTAGCTTCGACAAGCTCCCAACATAAGTTTGAGTTCAATGTAATTCCTAGTAATTTAAATGATTCAATATCATTGTATCTGTTTACACAAATTTATCATCTTATGAAACTGGCAAACACCGTCACGGCAAATGGAAAAAAGTAG
- Protein Sequence
- MPRDKNRGIKRPIINISNISLAIEDIKRGMTIETAAKKHTIAKTTLWRHYKRHQLSLQQTCIYVKSIESDYKRIFTHEEEIFLAEYIKTLAKLHYELNKNDVRKFVYLIAQKNNKCMPKTWREEKLASMDWLSRFVKRHPSVPLKQTNDLSKIVASTSSQHKFEFNVIPSNLNDSISLYLFTQIYHLMKLANTVTANGKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01398418;
- 90% Identity
- -
- 80% Identity
- -